RetrogeneDB ID: | retro_bole_24 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C3:49522048..49522525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bo3g134640 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo3g134660 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.16 % |
Parental protein coverage: | 56.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDSS-QGTSACAEEQQRIEILNSHNEKLVGLLHETGSTEVVVLCHGFRSNKNDTVMKSVAAAIEKEGISA |
MDSS..G.SACA..QQ..EI.NSHNEKLVGLLHETGS.EVVVLCHGF.S.KN.T..K.VAAAIEKEGIS. | |
Retrocopy | MDSSPKGNSACAQQQQKMEIQNSHNEKLVGLLHETGSREVVVLCHGFKSDKNNTILKNVAAAIEKEGISS |
Parental | FRFDFSGNGESEGSFYFGNYNHEADDLRSVIQHFSNFNRVVPLILGHSKGGDVVLLYASKY---HDISNV |
FRFDFSGNGESEG.F..GNY..EADDL.SVIQHFSN.NRVV..I.GHS.GG.VVLLYASKY.......N. | |
Retrocopy | FRFDFSGNGESEGGFNYGNYKYEADDLHSVIQHFSNTNRVVTTIIGHSRGGNVVLLYASKYCNDGNVRNI |
Parental | INLSGRYDLKKGI |
I..SGRYDLKKGI | |
Retrocopy | ISISGRYDLKKGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA001352 | 1 retrocopy | |
Brassica oleracea | Bo3g134660 | 1 retrocopy |
retro_bole_24 ,
|
Hordeum vulgare | MLOC_20645 | 1 retrocopy | |
Oryza sativa japonica | OS01G0579900 | 1 retrocopy | |
Populus trichocarpa | POPTR_0018s06860 | 1 retrocopy |