>retro_bole_27
ATGAGAAGAGGAGGGTTTCGTGTGTTGGATATGGTGAAACCGTTTTTGCCGTATCTGCCAGAGGTGCAGAGTGCTTTTGA
GAAGAAGAAGAAGGTTCCATTGAGAGAGAAGGTCATCTATACCCTGACCACTCTCTTCGTGTTTCTCGTTTGTAGTCAAC
TTCCTCTCTACGGTATCCACTCCACCACCGGCGCGGATCCGCTCTACTGGATGCGTGCCATTCTAGCATCGAGCCGTGGC
ACCCTCATGGAGCTCGGTATCGGTCCCATCATCACATCAGGGCTCGTGATGCAGCTCTTGACTGGCTCAAAGATTATTAA
GGTCACCGAGGAGGAGGATCATGCTCTCTTGAACGCTGCTCAGAAGCTTCTCGGCGTTTTGATCGCCTTAGGTCAAGCCG
TGACATACGTCCTCTCTGGAATGTACGGTCCAGTCGCACAGCTCGGGGTGGGAAACGCACTTCTCATCGTTCTCCAGCTT
GTCTTTGCCGGAGTCATCCTCCAGTGTCTGGACGAGCTTCTCCAGAAGGGGTATGGTCTTGGCTCAGCGATCTCCCTTTT
CATAGCGACTAGCCTCTGCGAGAGCGTTATATGGAAAGCCTTTAGCCCCGTTACGTTCAACAACATCGGACGGTCGGGAC
AGGAGTTTGAAGGCGCCTTGATCTCGCTCTTCCATAACCTGATAACCAAGTCAAGCATCCGACAAGCTTTCTTCAGACAG
AGCCTTCCAAACGTTACGAACTTGCTTGCAACAGTCTTGGTCTTCCTCATCGTCGTCTACTTCCAAGGCTTCCGCGTTGT
GTTACCTGTTTGGTCAAAGAACTCCCGACAAGGCGGCGGCTACCCGATCAAGCTCTTGTACACCTCCAACATGCCCATCA
TTCTCCAATCCGCTCTAGTCTCAAATCTCTACTTCATCTCTCAGCTTCTCTACAACAACTTCAGCGGAAATTTCCTGGTG
AACTTGCTGGGACAGTGGAGAGGACCCACACCAGTCGGTGGTCTCGCTTACTTGATCACAGCTCCATCAAGCCTCGCTGC
TCATCCTAGCCACACACTCTTCTACATCGTCTTCATGCTCTCTACTTGTGCGTTTCTATCAAAGACATGGATTGAAGTCT
CTGGGTCCTCCGCCAGAGACGTGGCCAAGCAGATCAAGAATCAAGGGATGTGGATGGCTGGGCACAGATATTCCAATCTG
CACAAGGAGCTTAACCGCTACATCCCAACAACAGCTGCCTTTGGAGGAATGTGCATTGGTGCACTCACTGTTCTTGCTGA
CCTCACCGGAGCTATTGGCTCAGGGACTGGTATCTTGCTTGCCGTCACAACCATATATCAGTTTCTCGACACTTTTGACA
AGGAACTAGCCACCGAGTCATGA
ORF - retro_bole_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.64 % |
Parental protein coverage: |
68.63 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GGFRVLHLVRPFLAFLPEVQSA---DRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRV |
| GGFRVL..V.PFL..LPEVQSA.....KVP.REKVIYT...LF.FLVCSQLPLYGIHSTTGADP.YWMR. |
Retrocopy | GGFRVLDMVKPFLPYLPEVQSAFEKKKKVPLREKVIYTLTTLFVFLVCSQLPLYGIHSTTGADPLYWMRA |
|
Parental | ILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVLSGM |
| ILAS.RGT.MELGI.PI.TSGLVMQLL.GSKII.V.....ED.ALLN.AQKLLG.LIA.G.AV.YVLSGM |
Retrocopy | ILASSRGTLMELGIGPIITSGLVMQLLTGSKIIKVTEE--EDHALLNAAQKLLGVLIALGQAVTYVLSGM |
|
Parental | YGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINT-GR |
| YGPV.QLGVGNA.LI.LQL.FAG.I..CLDELLQKGYGLGS.ISLFIAT..CES.IWKAFSP.T.N..GR |
Retrocopy | YGPVAQLGVGNALLIVLQLVFAGVILQCLDELLQKGYGLGSAISLFIATSLCESVIWKAFSPVTFNNIGR |
|
Parental | -GAEFEGAVIALFHMLITKSNKVAALRQAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARG |
| .G.EFEGA.I.LFH.LITKS......RQAF.RQ.LPNVTNLLATVL.FLIV.YFQGFRVVLPV.SKN.R. |
Retrocopy | SGQEFEGALISLFHNLITKS----SIRQAFFRQSLPNVTNLLATVLVFLIVVYFQGFRVVLPVWSKNSR- |
|
Parental | QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFVNLLGQWK |
| Q.G.YPIKL.YTSNMPIILQSALVSNLYFISQLLY..FSGNF.VNLLGQW. |
Retrocopy | QGGGYPIKLLYTSNMPIILQSALVSNLYFISQLLYNNFSGNFLVNLLGQWR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_27 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.