>retro_bole_32
ATGACGAGGGAGATCGAACCACAGTCACTGCAAAAGCTGAGTCTCAAATCAGTAAAGCGAGCTCTTGATCTTTTCTCCCC
CGCTCATGATCAACTCGCTCCGCCTGATCCGGAAAGCAAAAAGATTCGGCTTTCTCACAAGTTTCAAGTTGCATTTGGAG
GTGTAGAGCCCGTGAGTAAGCAGTCTATACGTAGAGCTGAATATAATAATGAGCAGATAGCTTCATCCAACGCCCTTGCC
GCCCTTCCAGGTCCAGAAGGAGCCAAACAGGGCAAAGCTTTAGTTGTCGGTCCTACTTTACCGCCAAGAAGCTTGAACGA
CAACACCGTTCACGCAGGCAAAAGCACCACGATTCTTCCTGCATTCGGATCCTCATCTGAAAGAAACCTGTCAACTTGTG
CTTTAATGCCTAGTCGATGGCCCCGTCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTGATCCAGGGGCACTTGGGG
TGGGTTAGATCTGTTGCATTTGACCCAAGAAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATTAAGGTATGGGA
TGTAGCGAGTGGAGTTCTGAAGCTCACACTTACTGGACATATTGGGCAAGTACGAGGCCTTGCTGTATGCAACAAAGATG
CCTACATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCAT
GGCCATCTCTCTGGCGTCTACTGTTTAGCTCTTCATCCAACTCTGGACGTTTTACTAACCGGAGGGCGAGACTCTGTCTG
CAGGGTGTGGGATATCCGTACGAAGATGCAGAATTTTGCACTCTCGGGACATGACAAAGACGTTTGTTCCGTCTTCACCC
GTCCAACCGACCCTCAAGTTGTTACCGGATCTCATGATTCCACCATTAAATTTTGGGACCTTCGATATGGTAGAACAATG
ACAACTCTAACGAATCATAAGAAAGCTGTCAGAGCAATGGCGCTCCATCCAACAGAGAATGCTTTTGTTTCTGCATCGGC
TGATAACATCAACAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCAGCAAAGAGCCATAATCAACG
CAGTGACTGTGAATGAGGATGGTGTAATGGTCACTGGAGGTGATAATGGAAGCTTATGGTTCTGGGATTGGAAGAGTGGT
CACAGTTTCCAACAGGCAGAAGCTATTGTACAGCCTGGTTCGCTGGAGAGTGAAGCTGGTATATATGCAGCGTGTTACGA
TCAGACGGGTTCAAGGCTGGTAACGTGTGAGGCAGACAAGACCATAAAGATGTGGAAGGAAGACGAGAACGCTACTCCTG
AAACCCATCCTCTTAACTTCAGACCTCCCAAAGAGATCAGACGCTTCTGA
ORF - retro_bole_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.65 % |
Parental protein coverage: |
97.92 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IEPQSLKKLSIKSLKRALDLFSPVHGQFPPPDAEAKKIRLSHKMKVAFGGVEPVS-QPPRQPDRGNEQTG |
| IEPQSL.KLS.KS.KRALDLFSP.H.Q..PPD.E.KKIRLSHK..VAFGGVEPVS.Q..R.....NEQ.. |
Retrocopy | IEPQSLQKLSLKSVKRALDLFSPAHDQLAPPDPESKKIRLSHKFQVAFGGVEPVSKQSIRRAEYNNEQIA |
|
Parental | TSSAL-ALPVPEGSKSTQKGVTENALVVGPTFQPKGLNSIGT-SGKSTTIIPANVSSYERNFSTSALMER |
| .S.AL.ALP...G......G....ALVVGPT..P..LN......GKSTTI.PA..SS.ERN.ST.ALM.. |
Retrocopy | SSNALAALP---GPEGAKQG---KALVVGPTLPPRSLNDNTVHAGKSTTILPAFGSSSERNLSTCALM-- |
|
Parental | IPSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVR |
| .PSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDP.NEWFCTGSADRTIK.WDVA.GVLKLTLTGHI.QVR |
Retrocopy | -PSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDPRNEWFCTGSADRTIKVWDVASGVLKLTLTGHIGQVR |
|
Parental | GLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTK |
| GLAV.N...YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTK |
Retrocopy | GLAVCNKDAYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTK |
|
Parental | MQIFALTGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMTTLTHHKKSVRAMTLHPKENAFASA |
| MQ.FAL.GHD..VCSVFTRPTDPQVVTGSHD.TIKFWDLRYG.TMTTLT.HKK.VRAM.LHP.ENAF.SA |
Retrocopy | MQNFALSGHDKDVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGRTMTTLTNHKKAVRAMALHPTENAFVSA |
|
Parental | SADNTKKFSLPKGEFYHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWKSGHSFQQSETIVQPGSL |
| SADN..KFSLPKGEF.HNMLSQQ..IINA..VNEDGVMVTGGDNGS.WFWDWKSGHSFQQ.E.IVQPGSL |
Retrocopy | SADNINKFSLPKGEFCHNMLSQQRAIINAVTVNEDGVMVTGGDNGSLWFWDWKSGHSFQQAEAIVQPGSL |
|
Parental | ESEAGIYAACYDQTGSRLVTCEADKTIKMWKEDENATPETHPVNFKPPKEIRRF |
| ESEAGIYAACYDQTGSRLVTCEADKTIKMWKEDENATPETHP.NF.PPKEIRRF |
Retrocopy | ESEAGIYAACYDQTGSRLVTCEADKTIKMWKEDENATPETHPLNFRPPKEIRRF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_32 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.