>retro_bole_42
ATTCTTTTGGTTTTCGAGTTCATCTCTGTTTTTGCAGCTCTCAACCAAACAAGATGCCTCCACTGACCAAGCAAAGGTCG
GTTAAGATCCCAAAGAACACCCGCGAGAACTATGTGAGGTCTCCAAACCACAATGCTCCGGCTTCATACCCATGGCCGCG
CAAGGACCAAGAGGGTCAGCCAATCCGTATCGACGACCCGATGCTCCTCGATTTTAACTGTGAGGGATGGGATAAGGAGT
CTGCTAAACGTTACAACTCACTCCTCGACATCGAGATCCTCCCCACCCGCTTTGGTCACGCAGACACTCTTGTCCCCCTT
GGTCTCGACACTGATGTCTTTGAAACTCTCCACGCCATGGAGATTGCTCCGCTCTGCTACCAAACGCACGAGCTCTACCC
AGACCTCGTTCGGCAAGTGCTCGCTACAGCTCACATCGGGTATGACGACCCCGCCAAGCCAACATATGAGAGCTGTTCCT
TATCATTCATGGCCGATGGCAAGTTCTGCTCTCTCTCGTTTGACAAGCTCAACGAGATTTATGAGATTTTGGACGAGCGT
AGAGAGGTAGCGGTGATCAACAAATTCTCGCCGACGGATCATTTTTGGGACCTCATTGCGAACGGCACTTTCACATCCTG
CAAGGCGTACCAGCGCAGATCAGAAACCCTACTCTAAGGGTGATTGCGAAGATGGTTTCCAACCTCTTGTTCGCTAAGGA
TCAGACATCGAAGGTCACAAAAGGGGAGCTGCAGATGCTGTACTCGGGGCTTGAGGACGAGGTCCGCAGAGCTAGAGACA
TTCCAGTCCAGACGGTCGACACTAACCCTGGGTACCATCTCATTTGGATGTTCTATACGCGACGGGGCTGC
ORF - retro_bole_42 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.5 % |
Parental protein coverage: |
80.61 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | VLLVEQPIACSSSFHQFLQMAHTKQSTKRTRATCTSSMPPLQA-QQTSETYPWPR-EQEGEPIDLDSPLL |
| .LLV...I.......Q............R...T....M..LQ........YPWPR..QEG.PI..D.P.L |
Retrocopy | ILLVFEFISVFAALNQTRCLH*PSKGRLRSQRTPARTM*GLQT<HNAPASYPWPRKDQEGQPIRIDDPML |
|
Parental | LDFNCEGWDKGTAARYNALLRVDMLPTRFCHAETLADLGINEDVFETLHAIGIAPLCYTTHELYPDLARQ |
| LDFNCEGWDK..A.RYN.LL....LPTRF.HA.TL..LG...DVFETLHA..IAPLCY.THELYPDL.RQ |
Retrocopy | LDFNCEGWDKESAKRYNSLLDIEILPTRFGHADTLVPLGLDTDVFETLHAMEIAPLCYQTHELYPDLVRQ |
|
Parental | VLATATITYEDSNAPSYANCSFSFMADGEYCSLSLDKLNEIYETTTEPKGVAVAKKFSPSNAFWDCIANG |
| VLATA.I.Y.D...P.Y..CS.SFMADG..CSLS.DKLNEIYE...E...VAV..KFSP...FWD.IANG |
Retrocopy | VLATAHIGYDDPAKPTYESCSLSFMADGKFCSLSFDKLNEIYEILDERREVAVINKFSPTDHFWDLIANG |
|
Parental | NFTPGKAYQ-SQIRNPALRVIAKTISNLLFAKDLTSKVTNGELQALYAGIEDEIRASGSSIPIQKVKTNP |
| .FT..KAYQ..QIRNP.LRVIAK..SNLLFAKD.TSKVT.GELQ.LY.G.EDE.R.....IP.Q.V.TNP |
Retrocopy | TFTSCKAYQ<AQIRNPTLRVIAKMVSNLLFAKDQTSKVTKGELQMLYSGLEDEVRRA-RDIPVQTVDTNP |
|
Parental | GFNSMTMICERRLC |
| G.....M...RR.C |
Retrocopy | GYHLIWMFYTRRGC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_42 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.