RetrogeneDB ID: | retro_bole_56 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C5:24492398..24492644(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo7g019910 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.71 % |
Parental protein coverage: | 65.08 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | TDVRML-ISVVAAEISCPWYCVSDMSDFTFGTNRPRFVASSTNVCLRMSVDMLLRLSIDADSSGRRCPEL |
TDV..L....V.A.IS.PW.CVS.MSD.TF.T..PR.VASST.VCL.MSVD..LRLSIDAD.SGRR...L | |
Retrocopy | TDVSYL<VAYV*AQISSPWLCVSNMSDVTFCTSLPRLVASSTDVCL*MSVDLSLRLSIDADASGRRAM*L |
Parental | YRS-LLPTDLSLLW |
..S.L.P....L.W | |
Retrocopy | *IS>LIPLE*LLSW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo7g019910 | 2 retrocopies |
retro_bole_56 , retro_bole_70,
|