>retro_bole_68
GTACTCGGGTTAAAACCCTCTCGTTCTTTTGCTCTGGATGGATATGTTTGGAACTACACAAAATCAGGAGTGTATTCAGT
TAAAACCGGTTACGACCTACTCCGATCAACCAAGCTGAGTCTTACTCATGAAAGGGCTATAGAACCGAGTATCACGAGCC
TTCAGAGCCATGTGTGGAAGATAAAGGCCCCGAGTAAGATGAAGCATTTCTTGTGGCAAGCTATCTCGGGATGTGTGGCG
ACAGCAGAGAGGCTCACTTATAGACACCTGGGCACCGATAGGAGTTGTCTTAGATGTGATGGCCCAGTGGAGTCGATTAA
TCATCTTCTTTTTGAATGTCCCCCAGCCCTGCAGGTCTGGGCTTTATCGGACTATCCGTCCCTTCCGGGTTACTTCCCGA
GTACATCTATATACCAAAACATGAACTTTTTGTTTTGGAAGAGAAAAGAGGTGGCTCCATCGAGACCACAATTCGATACC
TTCCCATGGATCTGTTGGTACATTTGGAAGGCAAGGAACGACAAACTCTTTAATGGGAAAGTCGTATCCCCGATTGACAC
TCTCCAACACGCGTCCCTCAAAGCCGAATGTTGGAGGAATGCTAATGAGAAGGAGGAAGCTAACGAAGATCATGGCGATC
CTCCTACTATGGAGGATTCCCCAGTGCCCCCTTGGATACCCCGAATCCCTACATGTCAAATTGATGCGTCATGGATCAGT
AATGGCAATGTTAGTGGCT
ORF - retro_bole_68 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.67 % |
Parental protein coverage: |
87.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | ILGLKVEASSMSFNFVKLSKSDSAGIVRNVESMGKNEKEEEMIQRSEKSERKGTKSHVWKIKAPSKMKHF |
| .LGLK...S......V..........V..........K......R..........SHVWKIKAPSKMKHF |
Retrocopy | VLGLKPSRSFALDGYVWNYTKSGVYSVKTGYDLLRSTKLSLTHERAIEPSITSLQSHVWKIKAPSKMKHF |
|
Parental | LWQVISGCVATAERLTYRPMSTDMICPRCAGPVESINHLLFECPQALQVWALSDYMSLPGYFPSTSIYQN |
| LWQ.ISGCVATAERLTYR...TD..C.RC.GPVESINHLLFECP.ALQVWALSDY.SLPGYFPSTSIYQN |
Retrocopy | LWQAISGCVATAERLTYRHLGTDRSCLRCDGPVESINHLLFECPPALQVWALSDYPSLPGYFPSTSIYQN |
|
Parental | MNFLFWFWERKEVAPLGPQFDTFP--CWYIWKARNDKLFNGKDVSPIDTLQHASLEADCWRKANEKEEAN |
| MNFLFW...RKEVAP..PQFDTFP..CWYIWKARNDKLFNGK.VSPIDTLQHASL.A.CWR.ANEKEEAN |
Retrocopy | MNFLFW--KRKEVAPSRPQFDTFPWICWYIWKARNDKLFNGKVVSPIDTLQHASLKAECWRNANEKEEAN |
|
Parental | EDHDDP-LLQRLRQCPLGYPE-LPVKLMHHGSIMAASVA |
| EDH.DP.LL.R..QCPLGYPE.L.VKLM.HGS.MA..VA |
Retrocopy | EDHGDP>LLWRIPQCPLGYPESLHVKLMRHGSVMAMLVA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_68 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
7 retrocopies.