>retro_brap_14
ATGGGGAATTTATTTTGCTGTGTACAAGTGGACCAATCAACGGTGGCGATAAAAGAAACGTTTGGGAAGTTCGAAGAGGT
TCTTGAGCCTGGTTGCCATTTTCTCCCTTGGTGTCTTGGTCAGCAAGTCGCTGGTTACCTCTCTCTCAGGCTTCAGCAGT
TGGATGTTCGCTGCGAGACCAAGACTAAGGACAATGTGTTTGTTAACGTTGTTGCATCGATTCAATACCGTGCATTGGCT
AATAATGCTAACGATGCCTTCTACAAGCTCAGTAACACAAGGAGCCAGATCCAAGCTTACGTCTTTGATGTTATCAGAGC
AAGTGTCCCCAAGCTGATTCTGGATGATGTCTTTGAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGA
AGGCAATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATTGTTGACATCGAGCCTGACGAACATGTCAAACGAGCC
ATGAACGAAATCAACGCTGCTGCAAGGATGAGGTTGGCTGCAAACGAAAAGGCTGAGGCTGAGAAAATCCTGCAGATCAA
GCGCGCTGAAGGTGAAGCCGAGGCCAAGTACCTTTCTGGTCTTGGTATCGCTCGTCAGAGGCAAGCCATCGTTGACGGGC
TACGCGACAGTGTCTTGGGCTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTCATGGACATGGTGCTCGTTACG
CAGTACTTTGACACCATGAAGGAGATTGGTGCTAGTTCCAAATCCTCTGCTGTGTTCATTCCCCACGGACCAGGAGCGGT
TCGTGATGTGGCTACTCAGATCAGAGATGGCCTCCTTCAAGGCTCGTTCGCAGACCAGTCTTGA
ORF - retro_brap_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.9 % |
Parental protein coverage: |
99.65 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGNLFCCIQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGQQVAGHLSLRLQQLDVRCETKTKDNVFVNV |
| MGNLFCC.QVDQSTVAIKETFGKFE.VLEPGCHFLPWCLGQQVAG.LSLRLQQLDVRCETKTKDNVFVNV |
Retrocopy | MGNLFCCVQVDQSTVAIKETFGKFEEVLEPGCHFLPWCLGQQVAGYLSLRLQQLDVRCETKTKDNVFVNV |
|
Parental | VASIQYRALANKANDAFYKLSNTRSQIQAYVFDVIRASVPKLLLDDVFEQKNEIAKAVEEELEKAMSAYG |
| VASIQYRALAN.ANDAFYKLSNTRSQIQAYVFDVIRASVPKL.LDDVFEQKNEIAKAVEEELEKAMSAYG |
Retrocopy | VASIQYRALANNANDAFYKLSNTRSQIQAYVFDVIRASVPKLILDDVFEQKNEIAKAVEEELEKAMSAYG |
|
Parental | FEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAI |
| FEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAI |
Retrocopy | FEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAI |
|
Parental | VDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQ |
| VDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQ |
Retrocopy | VDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQ |
|
Parental | GSFAEQ |
| GSFA.Q |
Retrocopy | GSFADQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_14 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.