>retro_brap_25
ATGTGGTTACCTAAACTCGACTACAGTAGTAGAAAGTATTTAGAGTCCGGACGCGCGAAGTTACGGCGTTTTCTTAACAA
GAATCTGCCATTACACAGAGCTCCGATTATAGAAAGCTTCCGCCTCGATTTTATTGCTTCACAATTCAAACCCGTGACAA
TTAGATCATGGCTTCTAACCGCAGTTTCACGCAACCTACGAGAGGTGGAGGTTTCTCATGGTTGTAATAATAAGGTGCTC
AACATGTTGCCAAGTAGCTTGTATACTTGTAAATCACTCGTGTCCGTGAAACTCAATGGAAGAAGGCTTCTAGTGGATGT
TCCTCGTATGGTTTCTCTCCCTTGTCTGAAAACTTTGCTGCTTCAGGATGTTGAGTACAAGAATGAAGATTCTCTTCAGC
GGCTTCTATCTAATTGCCCTGTTCTTGAAGATCTAGTGGTGGAAGGATGCAAAGGTGACAATATGGTAAAGTTCATTGTT
ATCGTCCCCTCGTTGCAACGTTTAACAGTCAATATACTTGAGGATCTAGATGAGTTTGTGATGGATACTCCTTCTTTGAA
ATACTTCAAACTTGACTACTATAATTACAAGAATCACCACTGTTTGATTGAGCGTATGCCTAAGCTGGAGGAGGCATATG
TAGAACTTAGCTTTAATCATGTTTATATTGATAGGTTTATCGGATCAATCACTTTTGTCAAACGTCTGACGTTATGCATA
GATGATGTGTATGGTGATGGTTTTGTCTTCGACCAGCTTGAACATCTGCAACTATGCACATGCGATGAACAACATACGTC
GGGTGCGGTGATTGTCCGGTTGCTCAAAGATTCACCTAACTTACGAGTACTAGACCTATTCAAAATGGAATACCATAACC
CTATTGGTCTGTATACTTGGAATCAACCAAGTACTGTTCCGGAATGTATTTTGTCGAGTCTACAAACTTTCAAGTGTTCA
GGATACTTAGGAAGACCACGAGAAAGAGATCTTGTGATTTATATATTAAAAAATGCTAATAACTTAAAGACTGCAACAAT
CTGGTTTCCGACGGTTGACATGAAAAAAGAGTTGGTTCTTTCTTCTCGAGCTTCAAACGCATGCCAACTTGTATTTGATT
GA
ORF - retro_brap_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.85 % |
Parental protein coverage: |
83.37 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MWLPKLKYGHMYCSESEWEKLQCFLDRNLPLHRAPVIESFRLELFNTRLKPENIKMWLVLALSHSLRELE |
| MWLPKL.Y......ES...KL..FL..NLPLHRAP.IESFRL.......KP..I..WL..A.S..LRE.E |
Retrocopy | MWLPKLDYSSRKYLESGRAKLRRFLNKNLPLHRAPIIESFRLDFIASQFKPVTIRSWLLTAVSRNLREVE |
|
Parental | IVYVSYPNRLNILPSNLFTCKSLVILKLGG-RILLDVTRLVSLPSLKTLRLLKVKYFKDETLQRLLSNCP |
| .........LN.LPS.L.TCKSLV..KL.G.R.L.DV.R.VSLP.LKTL.L..V.Y.....LQRLLSNCP |
Retrocopy | VSHGCNNKVLNMLPSSLYTCKSLVSVKLNGRRLLVDVPRMVSLPCLKTLLLQDVEYKNEDSLQRLLSNCP |
|
Parental | ILEDLMVDLHERDTTTTKFTALVPSLQRLTLRIPDNPHIDGFMIETPALKYFKLSGNIRNYHYCSIENMP |
| .LEDL.V.....D....KF...VPSLQRLT..I......D.F...TP.LKYFKL.......H.C.IE.MP |
Retrocopy | VLEDLVVEGCKGD-NMVKFIVIVPSLQRLTVNILED--LDEFVMDTPSLKYFKLDYYNYKNHHCLIERMP |
|
Parental | NLIEAHLDVEFPD--IKSLIGSATSVKRLTLCSKTLLAEGFVFNQLEHLEVCTCPMIFSNQLV--RLLKA |
| .L.EA.....F....I...IGS.T.VKRLTLC.......GFVF.QLEHL..CTC........V..RLLK. |
Retrocopy | KLEEAYVELSFNHVYIDRFIGSITFVKRLTLCIDDVYGDGFVFDQLEHLQLCTCDEQHTSGAVIVRLLKD |
|
Parental | SPKLKRLDISVVNHHKPIGMDEWNQPSTVPECLLSSLQTLSWSGEYIGEPQERDIVVYILKHALHLKTAT |
| SP.L..LD......H.PIG...WNQPSTVPEC.LSSLQT...SG.Y.G.P.ERD.V.YILK.A..LKTAT |
Retrocopy | SPNLRVLDLFKMEYHNPIGLYTWNQPSTVPECILSSLQTFKCSG-YLGRPRERDLVIYILKNANNLKTAT |
|
Parental | I |
| I |
Retrocopy | I |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_25 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.