RetrogeneDB ID: | retro_brap_3 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | A10:14219722..14220127(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bra008871 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra003745 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 77.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY |
P.....KKP.RYRPGTVALREIR.YQK.T..LI.KLPF.RLV.EI.Q..K..LRFQ..A..ALQEAAEA. | |
Retrocopy | PGNRSIKKPYRYRPGTVALREIRMYQKNTYPLIPKLPFERLVKEIGQSLKAELRFQGIAIDALQEAAEAF |
Parental | LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
LV..F.D.NL.AIHAKRVTIM..DI.LA.R.RG.. | |
Retrocopy | LVEFFHDANLFAIHAKRVTIMCNDIMLAKRLRGDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica rapa | Bra003745 | 4 retrocopies | |
Solanum lycopersicum | Solyc05g051500.2 | 1 retrocopy |