RetrogeneDB ID: | retro_brap_33 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | A03:21014780..21015398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bra013014 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra001266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.37 % |
Parental protein coverage: | 80.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFSGKSTSLLRRIKSEISLGRSVAMVKSSKDTRYAKDSVVTHDGIGFPCWAIPDLMSFHDIFGQDAY-DK |
MFSGK.T.LLRRI.SE...G..VA..KS.KD.RY...S.VTHDG..FPCWA.PDL.SF...FG.DAY... | |
Retrocopy | MFSGKTTTLLRRILSERESGKKVAVIKSDKDDRYCAESIVTHDGEKFPCWALPDLNSFKERFGFDAYRNQ |
Parental | LDVIGIDEAQFFGDLYEFCCKAADDDGKTVIVAGLDGDYLRRRFGAVLDIVPIADSVTKLTARCEVCGQK |
LDVIGIDEAQFFGDLYEFC..AAD..GKTVIVAGLDGDYLRRRFG.VLD.VP.AD.VTKL..RCEVCG.. | |
Retrocopy | LDVIGIDEAQFFGDLYEFCREAADKEGKTVIVAGLDGDYLRRRFGSVLDLVPVADTVTKLASRCEVCGKR |
Parental | AFFTLRKTCDTKTELLGGADVYMPVCRKHYVNNRIVIKASKKVLDSDKER |
A.FTLRKT....TEL.GGA.VYMPVCR.HYV....V......VL.....R | |
Retrocopy | ASFTLRKTEERETELIGGAEVYMPVCRSHYVSGQGVLETARAVLEASSQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT3G07800 | 1 retrocopy | |
Brassica oleracea | Bo3g061430 | 1 retrocopy | |
Brassica rapa | Bra001266 | 1 retrocopy |
retro_brap_33 ,
|
Arabidopsis lyrata | fgenesh2_kg.3__818__AT3G07800.1 | 1 retrocopy |