>retro_brap_45
GGTGGGCTGCTGGAAAATGAAGCTAGAGTTTCTCCTCCTCCTCCTCCCTTGAGTGGAACTAATAATAATAAAGGAGGTCG
ACCTACTTTTAAAGACTTTGGTGGGATTAAAAAAGTGTTGGATCAGTTAGAGTTTGATATTCTCTTCCCTCTTTTCAATC
CTCTAGCGTTTGAGACGACTGGAGTTAAGCCGCCACGCGGGTTTCTATTCCACGGACCACCTGGCTGTGGAAAGACTCGG
CTGGCCAATGCCATAGCCAACGAAGCTAGTGTTCCCTTTTACCAGATCTCAGCCACGGAAGTCGTCTCCGGTGTTCCTGG
TGATTCTGAAGAGAACATCAGAGAGCTCTTCTCTAAAGCACACAGGACCGCGCCTTCTATCATCTTTATCGATGAGATTG
ACGCCATTGGATCCAAGAGAGAGAAACAGCAAAGGGAGATGGAGAAGCGGATCGTAACACAGCTATTGACTTGTATAGAT
GGTCCTCATCAGCAGGGAGATGATGAAAATGGTGGATACGTTGTTGTCATTGGAGCTACTAATAGGCCTGACGCTCTTGA
TCCTGCTCTGAGAAGGCCCGGGCGGTTTGACCGTGAGATTGCTCTAACCGTTCCTGACGAAGACGCCAGGGCTGAGATAC
TCTCTGTTGTATCTAAAAGACTTAGACTCGAAGGCTCCTTCAACATGAAAGGAATCGCTCGCTTAACGCCCGGGTTTGTT
GGAGCTGATTTGGAAGGTTTAGCTAACATGGCTGGCAGTCTTTGCATCAAGAGAGTTATGAATTCAAGAAAATCGCAACT
GTCCGGCTGCCAGGATGATGATGGGTCTTGGCTGAGGCAGCCCTGGTCAGAAGAAGATTTGCAGATTCTCTTTGTGAGAA
TGTCTGATTTTGAGGAAGCGGTGAAGTTAGTCAAGGGATCTTTAACTCGAGAAGGTTTCTCCACCGTGCCTGATGTCACA
TGGGGTGATGTCGGTGGACTTGACCATCTACGGAGTGAACTCAACGATTACATAGTCAGCCCTATCAAAAATCCAGATAT
TTATAAAAAAATTGTGGCGAAGCTAGAGACAGGTTTCTTGCTCTATGGACCGCCGGGCTGCGGAAAGACGTTGGTTGCAA
AGGCAGTTGCGAACGAGGCAGGAGCTAATTTCATACACATCAAGGGTCCGGAACTTCTAAATAAATACGTTGGTGAAAGC
GAGCTTGCTATGCGGACCTTGTTTCAGCGCGCCCGGACA
ORF - retro_brap_45 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.48 % |
Parental protein coverage: |
55.72 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GGYAKLNSSTKLAPPPPPPLSGKVG--PTFKDFAGIKKVLDELDQYILSPLLNPPLFGKIGAKPPSGILF |
| GG...........PPP........G..PTFKDF.GIKKVLD.L...IL.PL.NP..F...G.KPP.G.LF |
Retrocopy | GGLLENEARVSPPPPPLSGTNNNKGGRPTFKDFGGIKKVLDQLEFDILFPLFNPLAFETTGVKPPRGFLF |
|
Parental | HGPPGCGKTRLAHAVANEAGVPFYQISATQVLSGVSGESEENIRELFSKAYRTAPSIVFIDEIDAIGSKR |
| HGPPGCGKTRLA.A.ANEA.VPFYQISAT.V.SGV.G.SEENIRELFSKA.RTAPSI.FIDEIDAIGSKR |
Retrocopy | HGPPGCGKTRLANAIANEASVPFYQISATEVVSGVPGDSEENIRELFSKAHRTAPSIIFIDEIDAIGSKR |
|
Parental | ENQQRETEKRIVTQLLTCMDGPPPGDTAAAAGYVVVIGATNTPDALDPALRRGRRFGREIALTAPDEHAR |
| E.QQRE.EKRIVTQLLTC.DGP.........GYVVVIGATN.PDALDPALRR..RF.REIALT.PDE.AR |
Retrocopy | EKQQREMEKRIVTQLLTCIDGPHQQGDDENGGYVVVIGATNRPDALDPALRRPGRFDREIALTVPDEDAR |
|
Parental | AEILSLVAQRLRLEGSLDMKRIARLTPGFVGADLEELADMAASLCVKRIMDSRKLQLSGDSDDGDDRSWL |
| AEILS.V..RLRLEGS..MK.IARLTPGFVGADLE.LA.MA.SLC.KR.M.SRK.QLSG..D..DD.SWL |
Retrocopy | AEILSVVSKRLRLEGSFNMKGIARLTPGFVGADLEGLANMAGSLCIKRVMNSRKSQLSGCQD--DDGSWL |
|
Parental | SQPWSDEDLDKLFVRMSDFEEAVKLVKGSLTREGFSTVPDVTWDDVGGLDHLRTELDDYVVNPIKYADAF |
| .QPWS.EDL..LFVRMSDFEEAVKLVKGSLTREGFSTVPDVTW.DVGGLDHLR.EL.DY.V.PIK..D.. |
Retrocopy | RQPWSEEDLQILFVRMSDFEEAVKLVKGSLTREGFSTVPDVTWGDVGGLDHLRSELNDYIVSPIKNPDIY |
|
Parental | EKFGKKLLETGFLLYGPPGCGKTLVAKAVANEAGANFIHIKGPELLNKYVGESERAIRTLFQRART |
| .....K.LETGFLLYGPPGCGKTLVAKAVANEAGANFIHIKGPELLNKYVGESE.A.RTLFQRART |
Retrocopy | XXXVAK-LETGFLLYGPPGCGKTLVAKAVANEAGANFIHIKGPELLNKYVGESELAMRTLFQRART |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_45 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.