>retro_brap_6
ATGGCGGAGTCTCATTCTCTCAACACTCAGCTCTCGACCCGCACTTCCATCTTCGGTCTGCGTTTATGGATCGTTCTCGG
CGTTTGCGTCGGAGCCGCAATCGTTATTCTCCTCTTCCTCATCTCTCTCTGGTTCATCCACCGAAGAAGCAACAACAAAG
CTCTCGAGTCTCACACCGTCGTCCCCGTAGTCTCCAAGGAGATTCGGGTCGACCCAATTCAACCCGACCCGACCCCCACA
CCCGAGACGACAACAAACCACCGTGAAGACGACAACAAAATCCACATCGACATCGGAAAAGACCACCGTATCTCCTTCCC
GGAGCGCGGCGGTTGGTCCGGGTCAGGGTCCGGGTCAGGACCCGACCAGGCTGCCTGTTCGGGTCCTGAGGTTTCTCATT
TAGGTTGGGGGCATTGGTACACTCTAAGAGAGCTCGAGGTTTCCACCGATGGTTTCTCCGACAAGCACGTGATCGGACAA
GGAGGGTACGGGATTGTCTACCGAGGCGTCCTCGAGGATAAATCGATAGTCGCTATAAAGAATCTTCTCAACAACAGAGG
GCAGGCTGAGAAAGAGTTTAAAGTCGAGGTCGAAGCGATAGGTAGAGTGCGGCACAAGAATCTCGTGAGGCTCCTTGGTT
ACTGCGTCGAAGGAGAGCATAGGATGCTTGTTTACGAGTATGTTGATAACGGGAACTTAGAGCAGTGGCTTCACGGCGAT
GCGTTGGGAGCTAAGAGTCCTCTCACGTGGGAGATTAGAATGAACATCGTTCTCGGGACGGCTAAAGGGTTGATGTATTT
ACACGAAGGTCTTGAACCTAAGGTTGTTCATAGAGATATCAAGTCTAGTAATATCTTGCTCGACAAGCAATGGAACGCGA
AGGTTTCGGATTTTGGTTTAGCTAAGCTATTGGGGTCGGAGATGAGCTACGTGACTACTCGTGTGATGGGTACTTTTGGT
TACGTGGCTCCTGAGTATGCTAGTACGGGGATGTTGAACGAGAGGAGCGATGTTTACAGCTTCGGTGTTCTTGTTATGGA
GATGATATCCGGGAGGAACCCTGTGGATTACAGCAGGCCTGTCGGAGAGGTGAACCTTGTGGAGTGGCTGAAGAGAATGG
TGTCGAATCGTGAAGCGGAAGGGGTTTTGGATCCGAGGCTGGTGGACAAACCGTCTTTGAGGTCGTTGAAGCGTACGCTT
TTGGTGGCTTTGAGATGTGTTGATCCTAATGCTCAGAAGAGACCAAAGATGGGTCATGTCATTCACATGCTTGAGGCTGA
GGACTTGGTGTCGAGAGATGATCGGAGAAACTCCGGCGGCGGCGGGGGAGGAGGTGATCCGAGAAGGTCACCGAGGAAGA
TGAATGTGGCGGAATCAGAGGATGAGAGTGTTAATTCCATTCTGATCAAGAATGACCAGTTAGCTTCGGACAAGGAGGAG
AGTCAGTGA
ORF - retro_brap_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.3 % |
Parental protein coverage: |
93.56 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | INAELSKPTSIFGLKLWVVIGILLGSLIVIALFFLSLCLTSRRRNRKPRHADFASAAVATPPVSKEIQEI |
| .N..LS..TSIFGL.LW.V....LG.....A...L..........R........S..V..P.VSK...EI |
Retrocopy | LNTQLSTRTSIFGLRLWIV----LGVCVGAAIVILLFLISLWFIHRRSNNKALESHTVV-PVVSK---EI |
|
Parental | VRPPAQQDHHYHP-TQPEIQVDIGKAEHRVVFSDRVSSGESRGTVSASETASYSGSGCVGPEVSHLGWGR |
| ...P.Q.D....P.T......D..K.........R.S..E..G..............C.GPEVSHLGWG. |
Retrocopy | RVDPIQPDPTPTPETTTNHREDDNKIHIDIGKDHRISFPERGGWSGSGSGSGPDQAACSGPEVSHLGWGH |
|
Parental | WYTLRELEAATNGLCEENVIGEGGYGIVYRGILNDGTKVAVKNLLNNRGQAEKEFRVEVEAIGRVRHKNL |
| WYTLRELE..T.G.....VIG.GGYGIVYRG.L.D...VA.KNLLNNRGQAEKEF.VEVEAIGRVRHKNL |
Retrocopy | WYTLRELEVSTDGFSDKHVIGQGGYGIVYRGVLEDKSIVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNL |
|
Parental | VRLLGYCVEGAYRMLVYDYVDNGNLEQWIHGD-VGDKSPLTWDIRTNIILGMAKGLAYLHEGLEPKVVHR |
| VRLLGYCVEG..RMLVY.YVDNGNLEQW.HGD..G.KSPLTW.IR.NI.LG.AKGL.YLHEGLEPKVVHR |
Retrocopy | VRLLGYCVEGEHRMLVYEYVDNGNLEQWLHGDALGAKSPLTWEIRMNIVLGTAKGLMYLHEGLEPKVVHR |
|
Parental | DIKSSNILLDRQWNAKVSDFGLAKLLFSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEL |
| DIKSSNILLD.QWNAKVSDFGLAKLL.SE.SYVTTRVMGTFGYVAPEYA.TGMLNE.SD.YSFG.L.ME. |
Retrocopy | DIKSSNILLDKQWNAKVSDFGLAKLLGSEMSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLVMEM |
|
Parental | ITGRNPVDYSRPQGEVNLVEWLKTMVGNRRSEEVIDPKIVEPPSSKALKRLLLVALRCVDPDANKRPKMG |
| I.GRNPVDYSRP.GEVNLVEWLK.MV.NR..E.V.DP..V..PS...LKR.LLVALRCVDP.A.KRPKMG |
Retrocopy | ISGRNPVDYSRPVGEVNLVEWLKRMVSNREAEGVLDPRLVDKPSLRSLKRTLLVALRCVDPNAQKRPKMG |
|
Parental | HIIHMLEAEDLFYRDERR |
| H.IHMLEAEDL..RD.RR |
Retrocopy | HVIHMLEAEDLVSRDDRR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_6 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.