RetrogeneDB ID: | retro_btau_1169 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | 29:7768119..7768528(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KLK7 | ||
| Ensembl ID: | ENSBTAG00000030483 | ||
| Aliases: | None | ||
| Description: | kallikrein-7 precursor [Source:RefSeq peptide;Acc:NP_001068724] |
Retrocopy-Parental alignment summary:
>retro_btau_1169
ATGGCAGCACCCTTGCTGATCCTATTGCTGTCCTTTGTCCTGGGATCTGCTGCACAGTACGCCCAGGGTGATGAGAGTTT
GGAGATTATTGATGGAGTCCCATGTCCAAGAGGCTCCCAGCCCTGGCAGGTGGCCCTGCACAAGGGCAGTCAGCCCCACT
GTGGAGGCGTGCTGCTCAGCAGGCAGTGGGTGCTCACCACTGCCCACTGGAAGATGAATGAGTACAATTTGCACATGCAC
AGTGATCAGCTGGTGGGAGGCCAGAACATCAAGGCCATGCTGTCCTGTCCACCATCCGGGTTATGCCACCCAGACCTGCA
CTAACAGCCTCATGCTGGTGAAGCCAAATGGCTGGGCCAGGCTATCATCCAATGTCAAGAATGTCAACCTGCCTTCCCAC
TGTGACCCA
ORF - retro_btau_1169 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.19 % |
| Parental protein coverage: | 54.58 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MTTPLVILLLTFALGSVAQEDQGNKSGEKIIDGVPCPRGSQPWQVALLKGSQLHCGGVLLNEQWVLTAAH |
| M..PL.ILLL.F.LGS.AQ..QG..S.E.IIDGVPCPRGSQPWQVAL.KGSQ.HCGGVLL..QWVLT.AH | |
| Retrocopy | MAAPLLILLLSFVLGSAAQYAQGDESLE-IIDGVPCPRGSQPWQVALHKGSQPHCGGVLLSRQWVLTTAH |
| Parental | CKMNEYNVHMGSVRLVGGQKIKATRS-FRHPGYSTQTHANDLMLVKLNGRAKLSSSVKKVNLPSHCDP |
| .KMNEYN.HM.S..LVGGQ.IKA..S...HPGY.TQT..N.LMLVK.NG.A.LSS.VK.VNLPSHCDP | |
| Retrocopy | WKMNEYNLHMHSDQLVGGQNIKAMLS>VHHPGYATQTCTNSLMLVKPNGWARLSSNVKNVNLPSHCDP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 0 .00 RPM |
| ERP005899_muscle | 0 .00 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .05 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .24 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
| SRP030211_testis | 0 .00 RPM | 1 .08 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1169 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1169 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1169 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000030483 | 1 retrocopy |
retro_btau_1169 ,
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