RetrogeneDB ID: | retro_btau_1291 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:86172514..86173067(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BIN3 | ||
Ensembl ID: | ENSBTAG00000005470 | ||
Aliases: | None | ||
Description: | bridging integrator 3 [Source:RefSeq peptide;Acc:NP_001068767] |
Percent Identity: | 62.77 % |
Parental protein coverage: | 73.52 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | VERDFEREYGKLQQLEEQTKRLQKDMKKSTDADLAMSKSAVKISLDLLSNPLCEQ-DQDFLNMVTALDTA |
VERDFE..YGK.QQLEEQT.RLQKDMK.S..ADLA..K.AV..SLDLLSNPL....DQDF.N....LD.. | |
Retrocopy | VERDFETVYGKFQQLEEQTRRLQKDMKRSPSADLAI-KLAVEVSLDLLSNPLSSK<DQDFMNVMAILDMV |
Parental | MKRMDAFNQEKVNQIQKTVIEP-LKKFGSVFPSLNMAVKRREQALQDYRRLQAKVEKYEEKEKTGPVLAK |
MK.MD.F.Q.K.NQIQKT...P.LKKF.SV...LNM.V........DYR.LQ.K.EKY..KEKT..VL.K | |
Retrocopy | MKWMDPFSQGKFNQIQKTMVDP<LKKFDSVSQNLNMVVGSSLPIE*DYR*LQDKMEKYQPKEKTRSVLPK |
Parental | LHQAREELRPVRDDFEAKNKQLLDEMPRFYNSRLDYFQPSFESLIRAQ |
LHQA.EEL....DD.E.K.KQLLDE..RF.NS.L..F.PSFESLI..Q | |
Retrocopy | LHQAPEELQLAWDDLETKIKQLLDELLRF*NS*LHSF*PSFESLIQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .92 RPM |
ERP005899_muscle | 0 .00 RPM | 27 .45 RPM |
SRP017611_brain | 0 .00 RPM | 7 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .74 RPM |
SRP017611_liver | 0 .00 RPM | 23 .48 RPM |
SRP030211_testis | 0 .00 RPM | 24 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005470 | 1 retrocopy |
retro_btau_1291 ,
|
Macropus eugenii | ENSMEUG00000002173 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005585 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009297 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006191 | 1 retrocopy |