>retro_btau_1457
ATGGCCGAAGCGTCGCCGCAGCCCGGACGGTACTTCTGCCACTGCTGCTCAGTCGAGATCGTGCCGCGCCTGCCGGATTA
CATCTGCCCAAGATGCGGGTCTGGGTTTATCGAGGAGCTTCCAGAAGAGAACAGGAGTGCAGAGAATGGTTCAGCCCCCT
CCACAGCCTCTGCGGACCAGAGCCGGCAGCAACCGTTCGAGAATGTGGACCAGCCCCTGTTCACGCTGCCGCAGGGCTAT
GGGCACTTTGCTTTCGGCATCTTTGACGACAGCTTTGAGATCCCCACGTTCCCCGCTGGGGCACAGGCTGATGATAGCAG
GGACCCCGAGAGCCGGCGGGAGCGAGAGCAGGACTCCTGGCACCCGTACGGCCCCCGGCAGCCCTGCGCCCGCCTCACCG
CGCGGCGGGCCACCGGCCGGCACGAAGGCGACCCCACGCTGGAAGGGATCATCCAGCAGCTGGTCAACGGCATCATCACC
CCGGCCACCATCCCCAACCTGGGCCTGGGTCCCTGGGACGTCCTGCATTCAAACCCGATGGACTACACCTGGGGGGCCAA
CAGCCTGGACGCCATCATCACGCAGCTCCTTAATCAGTTTGAAAACTCGGGTCCCCCACCCGCAGACAAAGAGAAAATCC
AGGCCCTCCCCACCGTGCCCGTGACTGAGGAGCACGTTGGCTCGGGGCTGGAGTGCCCCGTGTGCAAGGATGACTATGGG
CTGGGTGAGCATGTGCGGCAGCTGCCCTGCAACCACTTCTTCCACAATGGCTGCATCGTGCCCTGGCTGGAGCAGCACGA
CAGCTGCCCCGTCTGCCGAAAAAGCCTCACAGGACAGAACACGGCCACTGACCCCCCGGGCCTGGCTGTGGTGAGCTTCT
CCTCCTCCTCCTCCTCCTCGTCCTCCAGCTCACCTGGCAATGAGAACCCGGCCAGCAGCTCC
ORF - retro_btau_1457 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.4 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAEASPQPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSAENGSAPSTASADQSRQQPFENVD |
| MAEASPQPGRYFCHCCSVEIVPRLPDYICPRC.SGFIEELPEE.RSAENGSAPSTASADQSRQQPFENVD |
Retrocopy | MAEASPQPGRYFCHCCSVEIVPRLPDYICPRCGSGFIEELPEENRSAENGSAPSTASADQSRQQPFENVD |
|
Parental | QPLFTLPQGYGHFAFGIFDDSFEIPTFPPGAQADDSRDPESRREREQHSRHRYGARQPRARLTARRATGR |
| QPLFTLPQGYGHFAFGIFDDSFEIPTFP.GAQADDSRDPESRREREQ.S.H.YG.RQP.ARLTARRATGR |
Retrocopy | QPLFTLPQGYGHFAFGIFDDSFEIPTFPAGAQADDSRDPESRREREQDSWHPYGPRQPCARLTARRATGR |
|
Parental | HEGVPTLEGIIQQLVNGIITPATIPNLGLGPWGVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADK |
| HEG.PTLEGIIQQLVNGIITPATIPNLGLGPW.VLHSNPMDY.WGAN.LDAIITQLLNQFEN.GPPPADK |
Retrocopy | HEGDPTLEGIIQQLVNGIITPATIPNLGLGPWDVLHSNPMDYTWGANSLDAIITQLLNQFENSGPPPADK |
|
Parental | EKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQN |
| EKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNH.FH.GCIVPWLEQHDSCPVCRKSLTGQN |
Retrocopy | EKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHFFHNGCIVPWLEQHDSCPVCRKSLTGQN |
|
Parental | TATDPPGLAGVSFSSSSSSSSSS-PGNENPASSS |
| TATDPPGLA.VS..........S.PGNENPASSS |
Retrocopy | TATDPPGLAVVSXXXXXXXXXXSSPGNENPASSS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
5 .55 RPM |
ERP005899_muscle |
0 .05 RPM |
17 .79 RPM |
SRP017611_brain |
0 .09 RPM |
26 .31 RPM |
SRP017611_kidney |
0 .18 RPM |
24 .48 RPM |
SRP017611_liver |
0 .08 RPM |
30 .43 RPM |
SRP030211_testis |
1 .00 RPM |
146 .28 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1457 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1457 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1457 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.