RetrogeneDB ID: | retro_btau_1697 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | 9:17131747..17132033(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | N4BP2L1 | ||
| Ensembl ID: | ENSBTAG00000000993 | ||
| Aliases: | None | ||
| Description: | NEDD4-binding protein 2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q29S05] |
Retrocopy-Parental alignment summary:
>retro_btau_1697
CCTCTCCTGCCAACCCCCACCCGTAGGGCACCTCGGGCCACCACAGCTTTCAGAAACATCCTTACCTCCTCCTACCTCCT
CCTCATGGCTCTGGGAAAACTGCACTGGCTAGACAATTGCAGCAGGACTTTTCCAGGGCTCTGATCTTTGGCACAGATTT
TCTTTTTCCAGGGAAGATAATGTCTTTGAGTTCAATCCTGACTTCCTGGACGAAGCTCATGAATGGAACCAGAACAGAGC
AAGAAAAGCAATGAGGAATAGCATATCCCACATTATTACTGATGAT
ORF - retro_btau_1697 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.33 % |
| Parental protein coverage: | 54.91 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | PPAPPPLRGTPPR-RHSFRKHLYLLRGLP-GSGKTTLARQLQHDFPRALIFSTDDFF-FREDGAYEFNPD |
| P..P.P.R..P....HSF.KH.YLL...P.GSGKT.LARQLQ.DF.RALIF.TD..F..RED...EFNPD | |
| Retrocopy | PLLPTPTRRAPRA<HHSFQKHPYLLLPPPHGSGKTALARQLQQDFSRALIFGTDFLF<SREDNVFEFNPD |
| Parental | FLEEAHEWNQKRARKAMRNGISPIIIDN |
| FL.EAHEWNQ.RARKAMRN.IS.II.D. | |
| Retrocopy | FLDEAHEWNQNRARKAMRNSISHIITDD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 82 .48 RPM |
| ERP005899_muscle | 0 .00 RPM | 17 .10 RPM |
| SRP017611_brain | 0 .00 RPM | 49 .93 RPM |
| SRP017611_kidney | 0 .00 RPM | 21 .99 RPM |
| SRP017611_liver | 0 .00 RPM | 12 .61 RPM |
| SRP030211_testis | 0 .00 RPM | 12 .17 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1697 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1697 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1697 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000000993 | 1 retrocopy |
retro_btau_1697 ,
|
| Macropus eugenii | ENSMEUG00000016698 | 1 retrocopy |