>retro_btau_1811
ATGGGCGCCGTGGCCGCTGAGGCGCCGCTCCGGCTGCCGGCCGCGCCCCCGCTCGCCTTCTGCTGCTACACGTCGGTGCT
TCTGCTCTTCGCCTTCTCTCTGCCCGGGAGCCGCGCGTCCAACCAGCCCCCGGGTGGCGGCGGCGGCGGGGACTGTCCGG
GCGGCAAAGGCAAGAGCGTCAACTGCTCAGAATTAAATGTGAGGGAATCTGATCTAAGAGTTTGTGATGAATCATCATGT
AAATATGGAGGCGTCTGTAAAGAAGATGGAGATGGTTTGAAATGTGCATGTCAGTTTCAGTGCCATACGAATTACATTCC
TGTCTGTGGATCAAATGGGGACACGTACCAAAATGAATGCTTTCTCAGAAGGGCTGCTTGTAAGCACCAGAAAGAGATAA
CAGTAGTAGCGAGAGGACCGTGCTACTCTGATAATGGCTCTGGATCTGGAGAAGGAGCAGAAGAAGAAGGGTCAGGGGCA
GAAGTTCACAGAAAACACTCCAAGTGTGGACCCTGCAAGTATAAAGCTGAATGTGATGAAGATGCAGAAAATGTTGGGTG
TGTATGTAATATAGATTGCAGTGGATACAGTTTTAATCCTGTGTGTGCTTCTGATGGGAGTTCCTATAACAATCCCTGTT
TTGTTCGAGAAGCATCTTGTATAAAACAAGAACAAATTGATATAAGGCATCTTGGTCATTGCACAGACACAGATGACACT
AGTTTGTTGGGAAAGAAGGATGATGGACTACAGTATCGACCAGATGTGAAAGATGCTAGTGATCAAAGGGAAGATGTTTA
TATTGGAAACCACATGCCTTGCCCTGAAAACCTCAATGGTTACTGCATCCATGGAAAATGTGAATTCATTTATTCTACTC
AGAAGGCTTCTTGTAGA
ORF - retro_btau_1811 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.67 % |
Parental protein coverage: |
78.89 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGAVAAEAPLRLPAAPPLAFCCYTSVLLLFAFSLPGSRASNQPPGGGGGGDCPGGKGKSINCSELNVRES |
| MGAVAAEAPLRLPAAPPLAFCCYTSVLLLFAFSLPGSRASNQPPGGGGGGDCPGGKGKS.NCSELNVRES |
Retrocopy | MGAVAAEAPLRLPAAPPLAFCCYTSVLLLFAFSLPGSRASNQPPGGGGGGDCPGGKGKSVNCSELNVRES |
|
Parental | DLRVCDESSCKYGGVCKEDGDGLKCACQFQCHTNYIPVCGSNGDTYQNECFLRRAACKHQKEITVVARGP |
| DLRVCDESSCKYGGVCKEDGDGLKCACQFQCHTNYIPVCGSNGDTYQNECFLRRAACKHQKEITVVARGP |
Retrocopy | DLRVCDESSCKYGGVCKEDGDGLKCACQFQCHTNYIPVCGSNGDTYQNECFLRRAACKHQKEITVVARGP |
|
Parental | CYSDNGSGSGEGAEEEGSGAEVHRKHSKCGPCKYKAECDEDAENVGCVCNIDCSGYSFNPVCASDGSSYN |
| CYSDNGSGSGEGAEEEGSGAEVHRKHSKCGPCKYKAECDEDAENVGCVCNIDCSGYSFNPVCASDGSSYN |
Retrocopy | CYSDNGSGSGEGAEEEGSGAEVHRKHSKCGPCKYKAECDEDAENVGCVCNIDCSGYSFNPVCASDGSSYN |
|
Parental | NPCFVREASCIKQEQIDIRHLGHCTDTDDTSLLGKKDDGLQYRPDVKDASDQREDVYIGNHMPCPENLNG |
| NPCFVREASCIKQEQIDIRHLGHCTDTDDTSLLGKKDDGLQYRPDVKDASDQREDVYIGNHMPCPENLNG |
Retrocopy | NPCFVREASCIKQEQIDIRHLGHCTDTDDTSLLGKKDDGLQYRPDVKDASDQREDVYIGNHMPCPENLNG |
|
Parental | YCIHGKCEFIYSTQKASCR |
| YCIHGKCEFIYSTQKASCR |
Retrocopy | YCIHGKCEFIYSTQKASCR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .07 RPM |
0 .14 RPM |
ERP005899_muscle |
0 .74 RPM |
3 .70 RPM |
SRP017611_brain |
2 .79 RPM |
10 .23 RPM |
SRP017611_kidney |
0 .59 RPM |
1 .90 RPM |
SRP017611_liver |
0 .00 RPM |
0 .08 RPM |
SRP030211_testis |
1 .90 RPM |
16 .00 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1811 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1811 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1811 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.