RetrogeneDB ID: retro_btau_198

Retrocopy location

• Organism: Cow (Bos taurus)
• Coordinates: X:35334720..35335629(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSBTAG00000046045
• Aliases: MAGEA9, MAGEA9B
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSBTAG00000046143
• Aliases: None
• Description: None

Sequence

>retro_btau_198
GAGGAGGAAGAAGAGGAGGAGCAGCAGATGGAGGAAGAGGAGCAGATGGAGGAAGAAGAGCAGGTGGAGGAGGTGGAGGT
GGTGGAGGTGGTGGAGGTGGTGGAGCAGGTGGAGGAAGGAAATGCAGCTTCCTCTTCCTCCTCTCTCCCGGTCTGGGGCA
CCCTGGAGGAGATGGCTGCTGCTGAAACAGCCAGTCTCCCCCAGAGTCCTGTGGGTGTCTGCCTCTCTCCCACTGCCATG
GCTGACACTCCAGGGAGCCAATCTGAAGACCATGGCCCCAGCGGGCAAGATGAAGTGCCAAGCACCTCGCATGACCACGA
AGATGCCAGCTCCTCACTCCAAGATGCACTACAGGTGAAGAAGAATGAGCTGGCACAATTCCTGCTCAATAGGTATTTTG
CCAGGGAGCCGACCACAAAAGCAGAATTGCTGAGTAGTGTCCTCAGAGATTACCAGGACCACTTCGTGGTGGTCCTCGGT
CAAGCCTCAGAGTACCTGCAGCTGGTCTTTGGTTTGGAGGTGAAGGAGGTGGACCCCAGTGAGTACACCTATATCCTGGT
CCCCACCCTGGGCCTCACCCTCAATGAGATGCTGAGGGATGAGCAGAGGTTGCCCAAGGCTGGCCTCCTGGTGATAGTCC
TGTGCCTGATTGCTGTGGAGGTCAACTCCGCTCCTGAGGAGGCGATCTGGGGCGCACTCAGTAGGATAGGGGTGTATCCT
GGGAGTGAGCACTACATCTATGGGGAGCCCAGGGAGCTGCTGACCCAAGTGTGGGTGCAGGAAGGTTACCTAGAGTACCG
GCAGGTGCCTGACAGCAACCCTGCTTGCTCTGAGTTCCTGTGGGGTCCCCGGGCCTATGTGGAGACCAGCAAGTCTGAAG
TCCTGGAGTATCTGGACAGAGTCAGTTGA

Alignment

ORF - retro_btau_198 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.9 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VRGTLEEVAAAATPSLPQSPLGVWPSPNAMAATLGSQYEENGLSRQDEVLSTSCDQED--EFFKYALRVK
          V.GTLEE.AAA.T.SLPQSP.GV..SP.AMA.T.GSQ.E..G.S.QDEV.STS.D.ED.......AL.VK
Retrocopy VWGTLEEMAAAETASLPQSPVGVCLSPTAMADTPGSQSEDHGPSGQDEVPSTSHDHEDASSSLQDALQVK

Parental  KNELVQFLLSRCLAKEPITKAEVLNSVLKDYQDHFLVVFGQASEYLQLVFSLEVKEVDPSEHTYILVPSL
          KNEL.QFLL.R..A.EP.TKAE.L.SVL.DYQDHF.VV.GQASEYLQLVF.LEVKEVDPSE.TYILVP.L
Retrocopy KNELAQFLLNRYFAREPTTKAELLSSVLRDYQDHFVVVLGQASEYLQLVFGLEVKEVDPSEYTYILVPTL

Parental  GLTLSEMLSDGQRLPKAGLLVVILCLIAVEDGHAPEEEIWGALSRMGVCLG-EHFIYGEPRELLTQVWVQ
          GLTL.EML.D.QRLPKAGLLV..LCLIAVE...APEE.IWGALSR.GV..G.EH.IYGEPRELLTQVWVQ
Retrocopy GLTLNEMLRDEQRLPKAGLLVIVLCLIAVEVNSAPEEAIWGALSRIGVYPGSEHYIYGEPRELLTQVWVQ

Parental  EGYLVYRQVPDDDPACYEFLWGPQGYVETSKFKDLEYLDRV
          EGYL.YRQVPD..PAC.EFLWGP..YVETSK...LEYLDRV
Retrocopy EGYLEYRQVPDSNPACSEFLWGPRAYVETSKSEVLEYLDRV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
ERP005899_liver	0.00 RPM	0.00 RPM
ERP005899_muscle	0.00 RPM	0.00 RPM
SRP017611_brain	0.00 RPM	0.00 RPM
SRP017611_kidney	0.00 RPM	0.00 RPM
SRP017611_liver	0.00 RPM	0.00 RPM
SRP030211_testis	0.89 RPM	0.00 RPM

ChIP-Seq

Bos taurus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_btau_198 retrocopy.

TSS

Bos taurus was not studied using FANTOM5 data.

Lab

retro_btau_198 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_btau_198 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000046143	2 retrocopies	retro_btau_1808, retro_btau_198 ,
Canis familiaris	ENSCAFG00000019160	1 retrocopy	retro_cfam_144,