RetrogeneDB ID: | retro_btau_327 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:6181679..6182020(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLTA | ||
Ensembl ID: | ENSBTAG00000001137 | ||
Aliases: | CLTA, CLTA2 | ||
Description: | Clathrin light chain A [Source:UniProtKB/Swiss-Prot;Acc:P04973] |
Percent Identity: | 80. % |
Parental protein coverage: | 53.52 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDE-QLQKTKANNRAAEEAFVNDI |
Q.EPESI....E.QTE.LEALDANS.KQEAE.KEKAIK.LD.WYARQ...QLQKTKANNRAAEEAFV.DI | |
Retrocopy | QTEPESIL*RTE*QTECLEALDANS*KQEAE*KEKAIKDLDKWYARQAG<QLQKTKANNRAAEEAFVHDI |
Parental | EESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLV |
EE.SPGTEWER.A.LCDFNPKSSKQAKD.S...SVLISLKQ.PLV | |
Retrocopy | EELSPGTEWERAAQLCDFNPKSSKQAKDISHGHSVLISLKQGPLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 32 .30 RPM |
ERP005899_muscle | 0 .00 RPM | 139 .47 RPM |
SRP017611_brain | 0 .00 RPM | 60 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 117 .24 RPM |
SRP017611_liver | 0 .00 RPM | 60 .33 RPM |
SRP030211_testis | 0 .01 RPM | 39 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001137 | 1 retrocopy |
retro_btau_327 ,
|
Homo sapiens | ENSG00000122705 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010858 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006132 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002610 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003874 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019069 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020930 | 1 retrocopy |