RetrogeneDB ID: | retro_btau_498 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:38893852..38894353(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPK1 | ||
Ensembl ID: | ENSBTAG00000010312 | ||
Aliases: | MAPK1, ERK2 | ||
Description: | Mitogen-activated protein kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P46196] |
Percent Identity: | 81.44 % |
Parental protein coverage: | 52.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ |
H..F.T...A.RW..APEIMLNSKGYTKSIDIWSVGCILAE.LSNRPIFP.KHYLDQL.H.L.ILGS.SQ | |
Retrocopy | HIEFQTGNMANRW*WAPEIMLNSKGYTKSIDIWSVGCILAEILSNRPIFPRKHYLDQLKHVLSILGSLSQ |
Parental | EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP |
..LNCI.NLKARNYLLSLPHKNK.PWNRLFPN.D.KALDLLDKML.FNPHK.IEVEQALAH..LEQ..DP | |
Retrocopy | KNLNCIKNLKARNYLLSLPHKNKEPWNRLFPNVDAKALDLLDKMLAFNPHKKIEVEQALAHLSLEQC*DP |
Parental | SDEPVAEAPFKFDMELDDLPKEKLKEL |
SDEP..EAPF.FDMELDDLPK.KLKEL | |
Retrocopy | SDEPITEAPFTFDMELDDLPKKKLKEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .13 RPM |
ERP005899_muscle | 0 .00 RPM | 26 .18 RPM |
SRP017611_brain | 0 .00 RPM | 139 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 43 .92 RPM |
SRP017611_liver | 0 .00 RPM | 17 .67 RPM |
SRP030211_testis | 0 .00 RPM | 61 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010312 | 1 retrocopy |
retro_btau_498 ,
|
Ficedula albicollis | ENSFALG00000007935 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001501 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005952 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017722 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014484 | 2 retrocopies |