RetrogeneDB ID: | retro_btau_626 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | 16:47813252..47814980(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NAA35 | ||
| Ensembl ID: | ENSBTAG00000001016 | ||
| Aliases: | NAA35, MAK10 | ||
| Description: | N-alpha-acetyltransferase 35, NatC auxiliary subunit [Source:RefSeq peptide;Acc:NP_001180040] |
Retrocopy-Parental alignment summary:
>retro_btau_626
TCTGGACGGTGCGTGGCGGCGCGGGTGGCCACGAGAGAAGTAGGCGTAATGGTTATGAAAGCTTCTGTAGAAGATGATGA
TTCAGGATGGGAGCTCGGTATACCAGAAAAGATGGAAAAAAGCAACACAAACTGGGTGGACATAACCCAAGATTTTGAAG
AAGCTTGTCGAGAATTAAAGTTGGGAGAACTGCTTCATGATAAGCTATTTGGTCTTTTTGAAGCCATGTCTGCCATTGAA
ATGATGGATCCCAAGATGGATGCTGGCATGATTGGAAACCAAGTTAATCGAAAAGTTCTCAATTTTGAACAAGCTATCAA
GGATGGCACCATAAAAATTAAAGACCTCACCTTGCCTGAATTGATAGGGATAATGGATACATGCTTTTGCTGTTTGATAA
CGTGGTTAGAAGGCCATTCCTTGGCACAGACAGTATTTAGGTGCCTTTACATTCATAATCCAGATTTTATAGAAGATCCT
GCCATGAAAGCTTTTGCTCTGGGTATCTTGAAAATCTGTGACATTGCAAGGGAAAAAGTAAATAAAGCTGCTGTTTTTGA
AGAGGAAGATTTTCAGTCAATGAATTATGGATTTAAAATGGCTAACAGTGTGACAGATCTTCGAGTTACAGGCATGCTAA
AAGATGTGGAGGATGACATGCAAAGAAGAGTAAAGAGTACTTGAAGTCGACAAGGAGAAGAAAGAGACCCAGAAGTTGAA
CTAGAACACCAACGATGTTTAGCAGTATTCAGCAGAGTGAAATTTACTCGAGTGTTACTGACAGTGCTTATAGCCTTTAC
TAAGAAAGAGACCAGTGCTGTTGCAGAAGCTCAAAAATTGATGGTTCAAGCAGCAGATCTTCTTTCTGCCATTCATAATT
CATTGCATCATGGTATCCAGGCCCAGAATGATACTACAAAAGGAGATCATCCCATTATGATGGGTTTTGAGCCACTTGTT
AACCAGGGACTACTGCCACCCACCTTCCCTTGATATGCAAAAATAATAAAAAGAGAAGAAATGGTCAACTATTTTGCAAG
ATTGATAGATAGAATAAAAACTGTCTGTGAGGCGGTCAATTTAACAAATTTACATTGTATCTTGGATTTTTTCTGTGAAT
TTAGTGAACAATCACCTTGTGTTCTTTCGAGATCTCTATTACAAACCACTTTCCTGGTGGATAAAAAAAAGGTCTTTGGA
ATCCATCTCATGCAAGACATGGTGAAAGATGCTCTTCGGTCTTTTGTCAGTCCTCCGGTGCTCTCCCCAAAGTGCTGCCT
ATATAATAATCACCAGGCTAAGGACTCTATTGACTCTTTTGTTACTCACTGTGTTCGGCCATTCTGTAGTCTTATTCAGA
TCCATGGACATAACAGGGCTCGGCAGAGAGATAAACTCAGTCATATTCTTGAGGAATTTGCTACCTTGCAGGATGAGGCA
GAGAAGGTTGATGCAGCCCTTCATACTATGCTGTTGAAACAGGAGCCCCACAGGCAGCATTTGGCCTGTTTAGGTACCTG
GGTCCTTTACCATAACCTTCGCATTATGATACAGTATCTCCTAAGTGGCTTCGAATTGGAGCTCTACAGCATGCACGAGT
ATTATTACATATATTGGTATCTCTCTGAATTTCTTTATGCCTGGTTGATGTCGACATTAAGTCGTGCCGATGGCTCTCAG
ATGGCAGAGGAAAGGATAATGGAAGAGCAGCAGAAAGGCCGTAGTAGT
ORF - retro_btau_626 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 96.01 % |
| Parental protein coverage: | 76.39 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SGRLGRGSPCELRAGVMVMKASVEDDDSGWELGIPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLF |
| SGR...........GVMVMKASVEDDDSGWELGIPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLF | |
| Retrocopy | SGRCVAARVATREVGVMVMKASVEDDDSGWELGIPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLF |
| Parental | GLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHS |
| GLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHS | |
| Retrocopy | GLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHS |
| Parental | LAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVT |
| LAQTVF.CLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSM.YGFKMANSVTDLRVT | |
| Retrocopy | LAQTVFRCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMNYGFKMANSVTDLRVT |
| Parental | GMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKL |
| GMLKDVEDDMQRRVKST.SRQGEERDPEVELEHQ.CLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKL | |
| Retrocopy | GMLKDVEDDMQRRVKST*SRQGEERDPEVELEHQRCLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKL |
| Parental | MVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFARLID |
| MVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQ.LLPPTFP.YAKIIKREEMVNYFARLID | |
| Retrocopy | MVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQGLLPPTFP*YAKIIKREEMVNYFARLID |
| Parental | RIKTVCEVVNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGIHLMQDMVKDALRSFVSPPV |
| RIKTVCE.VNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVD...VFGIHLMQDMVKDALRSFVSPPV | |
| Retrocopy | RIKTVCEAVNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDXXXVFGIHLMQDMVKDALRSFVSPPV |
| Parental | LSPKCCLYNNHQAKDCIDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTM |
| LSPKCCLYNNHQAKD.IDSFVTHCVRPFCSLIQIHGHNRARQRDKL.HILEEFATLQDEAEKVDAALHTM | |
| Retrocopy | LSPKCCLYNNHQAKDSIDSFVTHCVRPFCSLIQIHGHNRARQRDKLSHILEEFATLQDEAEKVDAALHTM |
| Parental | LLKQEPHRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQ |
| LLKQEPHRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQ | |
| Retrocopy | LLKQEPHRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQ |
| Parental | MAEERIMEEQQKGRSS |
| MAEERIMEEQQKGRSS | |
| Retrocopy | MAEERIMEEQQKGRSS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .14 RPM | 11 .32 RPM |
| ERP005899_muscle | 0 .37 RPM | 31 .83 RPM |
| SRP017611_brain | 0 .55 RPM | 17 .86 RPM |
| SRP017611_kidney | 0 .71 RPM | 32 .78 RPM |
| SRP017611_liver | 0 .15 RPM | 8 .38 RPM |
| SRP030211_testis | 0 .69 RPM | 98 .85 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_626 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_626 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_626 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000001016 | 1 retrocopy |
retro_btau_626 ,
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