RetrogeneDB ID: | retro_btau_660 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
| Coordinates: | 17:29997547..29997847(+) | ||
| Located in intron of: | ENSBTAG00000012135 | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | BT.103350 | ||
| Ensembl ID: | ENSBTAG00000046013 | ||
| Aliases: | None | ||
| Description: | secreted seminal-vesicle Ly-6 protein 1 precursor [Source:RefSeq peptide;Acc:NP_001098948] |
Retrocopy-Parental alignment summary:
>retro_btau_660
ATGGCTAAGTGCCTTCTGCTACTGCTGCTGGTGGTCCTGTCCTCACTGCTCGGACTCCCGCAAGCTCTAGAATGTTTCCA
GTGTAACAGAGTCAACGCCAGCGGGGTCTGCGAGACTGGGGGAAGCACCTGCCAGACTCAAGGCAGCCAGCGGTGCTTTC
TGAGGAGGATCTACGAAAATGGCACGCTTTCCTATGGACACCAGGGTTGTAGCCAACTATGTATTCCCATGAAGTTCTTT
AATCCCAGTGTTATTGTGGAATATAAATGCTGTCATGACTCGCCTCTCTGCAACAAGTTC
ATGGCTAAGTGCCTTCTGCTACTGCTGCTGGTGGTCCTGTCCTCACTGCTCGGACTCCCGCAAGCTCTAGAATGTTTCCA
GTGTAACAGAGTCAACGCCAGCGGGGTCTGCGAGACTGGGGGAAGCACCTGCCAGACTCAAGGCAGCCAGCGGTGCTTTC
TGAGGAGGATCTACGAAAATGGCACGCTTTCCTATGGACACCAGGGTTGTAGCCAACTATGTATTCCCATGAAGTTCTTT
AATCCCAGTGTTATTGTGGAATATAAATGCTGTCATGACTCGCCTCTCTGCAACAAGTTC
ORF - retro_btau_660 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98. % |
| Parental protein coverage: | 100. % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAKCLLLLLLVVLSSLLGLPQALECFQCNRVNASGVCETGGSTCQTQGSQQCFLRRIYENGTLSYGHQGC |
| MAKCLLLLLLVVLSSLLGLPQALECFQCNRVNASGVCETGGSTCQTQGSQ.CFLRRIYENGTLSYGHQGC | |
| Retrocopy | MAKCLLLLLLVVLSSLLGLPQALECFQCNRVNASGVCETGGSTCQTQGSQRCFLRRIYENGTLSYGHQGC |
| Parental | SQLCIPMKLFNPSVIVEYKCCHDSPLCNKF |
| SQLCIPMK.FNPSVIVEYKCCHDSPLCNKF | |
| Retrocopy | SQLCIPMKFFNPSVIVEYKCCHDSPLCNKF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 0 .07 RPM |
| ERP005899_muscle | 0 .05 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 2 .19 RPM |
| SRP017611_kidney | 0 .06 RPM | 0 .12 RPM |
| SRP017611_liver | 0 .08 RPM | 0 .00 RPM |
| SRP030211_testis | 0 .08 RPM | 0 .00 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_660 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_660 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_660 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000046013 | 1 retrocopy |
retro_btau_660 ,
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