>retro_btau_744
ATGCTTCTCGCGACGTTTAAGCTGTGTGCTGGGAGCTCCTACAGACACGTGCGCAGCATGGAGGGGCTGCAGCAGCAGGC
TGTGCTGGCCATCGGCCAGGAGCTGAACCGGAGGGCCCTAGGGGGCCCGGCCCCAGCTGCGTGGATTAACCAGGTTCGGC
GTTGCGGCTCTCTCCTAGGTTCTCAGCTGGAAGACCCTCTCTACAGTGACCAAGAGCTGGCCTATATCTAGCAGGGAGAG
GAGGCCATGCAGAGGGCCCTGGGCATCCTCAAAGACCAGGAGGGCTGGAAGAAGGAGAGCCGGCAGGCCAATGGGGACGA
GGTGCTGAGTAAAGTGATCCCTGACGTGGGCAAGGTGTTCCGGTTGGAGGTGGTGGTGCACCAGCCCATGGAGAGGCTTT
ATGAAGAGCTTATGGAGCGCATGGAGGCCATGGGTGAGTGGAATCCCAATTTTAAAGGAGATCAAGGTCCTGCAGAAGAT
TGGAAAAGACATGGTCATCACTCACGAGTTGGCTGCAGAGGCGGCAGGAAACCTCGTGGGGCCCCGAGACTTTGTGAGCG
TACGCTGTACCAAGTGCCGGGGCTCCATGTGTGTGCTGGCTGGCATGGCCACACTCTATGAGGAGATGCCCCAGCAGAAG
GGTGTCATCAGAGCTGAGCACGGCCCCACCTGCATGGTGCTCCGCCCCTTGGCTGGAAGTCCCTCAAGGACCAAACTCAC
CTGGCTGCTCAGCATTGACCTCAAGGGATGGCTGCCAAAGACCATCATCAACCAGGTCCTCTCGCAGACCCAGGTGGATT
TTGCCAATCACCTGCGCAAGCGCCTGGAGTCCTGCCCTGCTCTTGAAGCCAGGTGT
ORF - retro_btau_744 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.5 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MLLATFKLCAGSSYRHVRSMKGLQQQAVLAIGQELNRRALGGPAPAAWINQVRRRGSLLGSQLEDPLYSD |
| MLLATFKLCAGSSYRHVRSM.GLQQQAVLAIGQELNRRALGGPAPAAWINQVRR.GSLLGSQLEDPLYSD |
Retrocopy | MLLATFKLCAGSSYRHVRSMEGLQQQAVLAIGQELNRRALGGPAPAAWINQVRRCGSLLGSQLEDPLYSD |
|
Parental | QELAYIQQGEEAMQRALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEELVER |
| QELAYI.QGEEAMQRALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVFRLEVVV.QPMERLYEEL.ER |
Retrocopy | QELAYI*QGEEAMQRALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVFRLEVVVHQPMERLYEELMER |
|
Parental | MEAMGEWNPN-VKEIKVLQKIGKDTVITHELAAEVAGNLVGPRDFVSVRCTKRRGSMCVLAGMATLYEEM |
| MEAMGEWNPN..KEIKVLQKIGKD.VITHELAAE.AGNLVGPRDFVSVRCTK.RGSMCVLAGMATLYEEM |
Retrocopy | MEAMGEWNPN>LKEIKVLQKIGKDMVITHELAAEAAGNLVGPRDFVSVRCTKCRGSMCVLAGMATLYEEM |
|
Parental | PQQKGVIRAEHGPTCMVLRPLAGSPSRTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCP |
| PQQKGVIRAEHGPTCMVLRPLAGSPSRTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCP |
Retrocopy | PQQKGVIRAEHGPTCMVLRPLAGSPSRTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCP |
|
Parental | ALEARC |
| ALEARC |
Retrocopy | ALEARC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
4 .11 RPM |
ERP005899_muscle |
0 .00 RPM |
0 .90 RPM |
SRP017611_brain |
0 .00 RPM |
3 .93 RPM |
SRP017611_kidney |
0 .00 RPM |
2 .79 RPM |
SRP017611_liver |
0 .00 RPM |
1 .21 RPM |
SRP030211_testis |
0 .04 RPM |
212 .42 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_744 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_744 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_744 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
7 retrocopies.