RetrogeneDB ID: | retro_cfam_2184 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:74824090..74824402(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB2 | ||
Ensembl ID: | ENSCAFG00000003930 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa [Source:HGNC Symbol;Acc:7697] |
Percent Identity: | 68.57 % |
Parental protein coverage: | 97.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGMSALTRLAPFVRVGGQLFRGPGPRAAGGGGVRHAGGDVHIEPRYRQFPQLTRSQVIQAEFFSGTMWFW |
A.MSALT.LA.F...GG..FRG....AAGG..V.HAGG.VHIE..Y.QFPQLTRSQV..AEF...TMWFW | |
Retrocopy | ADMSALTVLASFIHIGGHFFRGSS-LAAGGSRVSHAGGGVHIELWYTQFPQLTRSQVTLAEFLTATMWFW |
Parental | ILWRFWHDSDAVLGHFPYPDPSQWTDEELGILPDD |
I.W.FWHD.DA.LGH.PYPDP.QWT.EEL.IL.DD | |
Retrocopy | IPWYFWHDLDAALGHLPYPDPFQWTGEELDILSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 47 .33 RPM |
SRP017611_brain | 0 .00 RPM | 23 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 107 .97 RPM |
SRP017611_liver | 0 .00 RPM | 21 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000011176 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003930 | 3 retrocopies |
retro_cfam_1673, retro_cfam_2184 , retro_cfam_958,
|
Equus caballus | ENSECAG00000000877 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003423 | 3 retrocopies | |
Mus musculus | ENSMUSG00000002416 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009644 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013184 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000026616 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015924 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016495 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002566 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000547 | 2 retrocopies |