RetrogeneDB ID: | retro_cfam_757 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:31809668..31809944(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000015719 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.78 % |
Parental protein coverage: | 73.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VVGAVIDEGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKAAMEVEAPTRPVRTSGPQPKRQ |
VVGAV.D.GLIT.HHL.KR.SSA.ANIT.SG.KRRKLLQQIRLAQKEKAA.EVEAPTRP.RTSGP.PK.Q | |
Retrocopy | VVGAVVDKGLITQHHLTKRVSSACANITPSG*KRRKLLQQIRLAQKEKAATEVEAPTRPARTSGPPPKQQ |
Parental | KKTKAPQDIDMEDLGDERGISH |
KKTKAPQDIDMEDLGDE..ISH | |
Retrocopy | KKTKAPQDIDMEDLGDES*ISH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 18 .94 RPM |
SRP017611_brain | 0 .00 RPM | 13 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .66 RPM |
SRP017611_liver | 0 .00 RPM | 5 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006512 | 1 retrocopy | |
Bos taurus | ENSBTAG00000010465 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015719 | 2 retrocopies |
retro_cfam_1104, retro_cfam_757 ,
|
Felis catus | ENSFCAG00000025454 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013949 | 4 retrocopies | |
Mus musculus | ENSMUSG00000071653 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000033103 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019701 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000023323 | 2 retrocopies |