>retro_cfam_975
CAGGAGACTGTTTCCAAAGATGTACCTCAGACTGGATGGGGATATTGGGGCAGCTGGGGCAAGTGCTTGCTCTCTTCAGC
CTCAGCTACAGTAGCTACAGTAAGACAAGGTATTTCAAATGTCATTGAGAAGGCAGAGACTTCTCTTGGAATTCCTAGTC
CCAGTGAAATTTCAACTGAAGTCCAGTATGCAGCAGGAGAGACAAATGCCAATGAGAATGCAAACTCCTCCTCATTGATT
GAGCCATTTGGTGTATTTTCAACCATCTCTACTGCTGTTCAAACCACAGGAAAGAGCGTGATCATTGGGGGTTTGGATGC
CTTAGAATTCATTGGGAAAAAGACAATGGATGTAATAGCAGAAGGGGATCCTGGATTTAAAAGAACCAAGGGTCTGATGA
ACCGGAATTCTACATTGTCTCAGGTTTTACGAAAGGCAAAGGAGAAAGAAGAGCTACGGACCTCCAATGAGGTTACCTTG
GAAACGGACAAGAAAACTCATTATGGGCTCCTTTTTGATGAATTTCAAGGCCTTTCGCATCTGGAAGCTCTGGAGATGCT
TTCACGAGAAAGTGAAATAAAGGTGAAATCTATTCTTAATTCTTTAAGTGGAGAAGAACTACAGACTCTAAAACTTGAAT
TGGAGCAACTCAAGGAAGCATTTTCTCTAGCAGAGTTCTGTGAGGAAGAGGAAGAATAGAAAAAAGATGACGAAGACTTT
ACCAAAGAAATAACAGAGCTATTTTCCCAGCTGCATGTCTCCTCCAAACCTGAGAAACTTACCAAGGCAAGGAATACTGC
CTACGAATGGATCAGTACATCTCTGGCCAAGCCATCAGAAGAGAAGGAAGATGGAGAGAAACAGTTGGAAACAGAAAAAA
TTGAGCAAATCAGTAAAAATTCAATAGAGGATATCCATGCATTTGCAATCCGGAGCCTAGCAGAGCTGACGCTGTTTCAC
AAAACAGCGGCTCTGGTTCTGCATGGCCAGAAGCAGGAAGTGACAGCCATAGAAAGAAGCAGAACTTTTTCCCAGATGAC
AATTGTGTTGTGTAAAGAGTTGTCTTCTCTGTCTAAAGAGTTCACCACTTGCCTAACAACTGCTGGGGTCAAAGAAAAGG
CAGACATCCTTAATCCCCTAGTCACTGCAGTATTTCTGGAGGCATCAAACAGTGCTTCCTATATGCAGGATGCCTTTCAG
CTGCTCTTACCTGTGCTAGAGATCTCTCTCATTGAGAACAAAACTGAATTACCAGAGGCA
ORF - retro_cfam_975 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.18 % |
Parental protein coverage: |
84.83 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KETVSKDVPQTGWGYWGSWGKSLLSSASATVATVGQGISNVIEKAETSLGIPSPSEISTEVQYAAGETNA |
| .ETVSKDVPQTGWGYWGSWGK.LLSSASATVATV.QGISNVIEKAETSLGIPSPSEISTEVQYAAGETNA |
Retrocopy | QETVSKDVPQTGWGYWGSWGKCLLSSASATVATVRQGISNVIEKAETSLGIPSPSEISTEVQYAAGETNA |
|
Parental | NENANSSSLIGPFGVFSTISTAVQTTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRNSTLS |
| NENANSSSLI.PFGVFSTISTAVQTTGKSVI.GGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRNSTLS |
Retrocopy | NENANSSSLIEPFGVFSTISTAVQTTGKSVIIGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRNSTLS |
|
Parental | QVLREAKEKEELWTSNEVTLETDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILNSLSGEELQTL |
| QVLR.AKEKEEL.TSNEVTLETDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILNSLSGEELQTL |
Retrocopy | QVLRKAKEKEELRTSNEVTLETDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILNSLSGEELQTL |
|
Parental | KLELEQLKEAFSLAEFCEEEEEEKKDDEDFTKEITELFSQLHVSSKPEKLTKARNTAYEWISTSLAKPSE |
| KLELEQLKEAFSLAEFCEEEEE.KKDDEDFTKEITELFSQLHVSSKPEKLTKARNTAYEWISTSLAKPS. |
Retrocopy | KLELEQLKEAFSLAEFCEEEEE*KKDDEDFTKEITELFSQLHVSSKPEKLTKARNTAYEWISTSLAKPS- |
|
Parental | EKEDGEKQLETEKIEQISKNSIEDIHAFAIRSLAELTACSIELFHKTAALVLHGQKQEVTAIERSRTLSQ |
| ..E..E........E.I...S...I....I...A........LFHKTAALVLHGQKQEVTAIERSRT.SQ |
Retrocopy | --EEKEDGEKQLETEKIEQISKNSIED--IHAFAIRSLAELTLFHKTAALVLHGQKQEVTAIERSRTFSQ |
|
Parental | MTIVLCKELSSLSKEFTTCLTTAGVKEKADILNPLITAVFLEASNSASYIQDAFQLLLPVLEISLIENKT |
| MTIVLCKELSSLSKEFTTCLTTAGVKEKADILNPL.TAVFLEASNSASY.QDAFQLLLPVLEISLIENKT |
Retrocopy | MTIVLCKELSSLSKEFTTCLTTAGVKEKADILNPLVTAVFLEASNSASYMQDAFQLLLPVLEISLIENKT |
|
Parental | ELPEA |
| ELPEA |
Retrocopy | ELPEA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .00 RPM |
21 .80 RPM |
SRP017611_brain |
0 .16 RPM |
22 .07 RPM |
SRP017611_kidney |
0 .00 RPM |
35 .73 RPM |
SRP017611_liver |
0 .00 RPM |
12 .25 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_975 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_975 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_975 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.