RetrogeneDB ID: | retro_chof_1013 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_183801:3649..4032(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BUD31 | ||
Ensembl ID: | ENSCHOG00000004055 | ||
Aliases: | None | ||
Description: | BUD31 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29629] |
Percent Identity: | 51.91 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRK-VESLWPIFRIHHQKTRYIFDLFYKRKA |
M.KVK......P..WE....T..........A.TEPH.GKRK..ESL.PIFR..HQKTR.IF.L.Y...A | |
Retrocopy | MMKVKKKLEISPSDWEVT*LTWVS*VWNISGAKTEPHKGKRK<MESL*PIFRVLHQKTRCIFNLLYRWIA |
Parental | ISRELYEYCIREGYADK-NLIAKWKKQGYENLCCLRCIQTR-DTNFGTNCICRVPKSKLEV |
IS.EL..YCI.EGYA...N.I.K.K..G.E.L.......T..DTNFGT.CIC.V.KSKL.V | |
Retrocopy | ISQELHGYCIKEGYAAY>NAIIKRKREGCEILLLSAMYLTQ<DTNFGTHCICWVHKSKLDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006269 | 2 retrocopies | |
Bos taurus | ENSBTAG00000020439 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004055 | 1 retrocopy |
retro_chof_1013 ,
|
Dipodomys ordii | ENSDORG00000000739 | 1 retrocopy | |
Equus caballus | ENSECAG00000024151 | 2 retrocopies | |
Ficedula albicollis | ENSFALG00000013804 | 1 retrocopy | |
Homo sapiens | ENSG00000106245 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015119 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012201 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006920 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017426 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017376 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019451 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007527 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000989 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010640 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003005 | 1 retrocopy |