>retro_chof_120
TTACCACTCTACCTGGCCTCGCTCTTCATCAGCCTCATTTTCCTGTTGGTGAATTTAACCTGTGCGGTGCTGGTAAAGGC
AGGAAATTGGGAGAGGAAGGTTATCGTCTCAGTGCGAGTGGCTGTTAATGATACTCTCTTTGTACTGTGTGCCGTCTCTC
TCTCCATCTGTCTCTACAAAATTTCTAAGATGTCCTTAGTCAACATCTACTTGGAGTCTAAGGGCTCTTCTGTGTGTCAA
GTGACAGCCATTGGTGTGACCATCATCCTGCTTTATACATCTCGAGCCTGCTACAACCTGTTCATCTTATCATTTTCTCA
GAACAAGAATGTCCATTCCTTTGATTACGACTGGTACAATGTATCAGACCAGGCAGATTTGAAGAACCAGTTGGGAGATG
CCGGATATGTGGTATTTGGAGTGGTCCTTTTTGTGTGGGAACTCTTACCTACTACCTTAGTAGTTTACTTCTTCCGAGTT
AGAAACTCTACAAAGGACCTTACCAACCCTGGAATGCTCCCCAGCCATGGATTCAATCCCAGGTCTTATTTCTTCGACAA
CCCTCGAAGATATGACAGTGATGATGACCTTGCCTGGAACATCGCCCCTCAGGGACTTCAGGGA
ORF - retro_chof_120 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.08 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSLANIY |
| LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSL.NIY |
Retrocopy | LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSLVNIY |
|
Parental | LESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQAD-KNQ-GDAGYVVFG |
| LESKGSSVCQVTAIGVT.ILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQAD.KNQ.GDAGYVVFG |
Retrocopy | LESKGSSVCQVTAIGVTIILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQADLKNQLGDAGYVVFG |
|
Parental | VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG |
| VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG |
Retrocopy | VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_120 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.