RetrogeneDB ID:

retro_chof_1200

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_22357:7672..8098(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAMP2
Ensembl ID:ENSCHOG00000003045
Aliases:None
Description:receptor (G protein-coupled) activity modifying protein 2 [Source:HGNC Symbol;Acc:9844]


Retrocopy-Parental alignment summary:






>retro_chof_1200
ATGATATATAAGCCCCAGAATCCCTGGCTCAACTTCTTCCCACCACAGGCATCTTGGAGTCAGAAGGGAAGATAGTGGAG
GAGAAGGATGAGACAGATGTCTATTTTGCTGGCTGAATTATAAGGCTTAACTGGACTCTATTCAAAAAGATTGGTGTGAC
TGAGCCCTGATCAGCAGGCCTTAGAGCACTCTGTGAGATTACTTGGAGCTGAATGCTGAAGAGTTTGACCAGGGCTTCCC
CACTCCCCGGGCAGAGACGATCATCTTTGGCACTCACCAGATCCACTTTGCCAACTGCTCCTCGGTGCACCCTATCTTCT
CTGGCCCCCCAGAGGATGTGCTCCTAACCATGATCATAGCCCCCATCAGCCTCCTACCCTTCCTCGTCACCCCTGTGTGT
GGGAGAGTCAAGAGAGTGAGGTCCAG

ORF - retro_chof_1200 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.81 %
Parental protein coverage: 80.79 %
Number of stop codons detected: 4
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVVLKPQ-ESLAQPLPTPGILKSEGKTVEEEYKTYVQHS-WLHYKSYMDSIKKDWCDWAMISRPYSSLRDC
...KPQ.ESLAQ.LPT.GIL.SEGK.VEE...T.V....WL.YK...DSI.KDWCD.A.ISRP.S.L.D.
RetrocopyMIYKPQ<ESLAQLLPTTGILESEGKIVEEKDETDVYFA<WLNYKA*LDSIQKDWCD*ALISRP*STL*DY
ParentalLELNAEKFGLGFPNPWAERIIFDTHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLVTLV-VWRS
LELNAE.F..GFP.P.AE.IIF.THQIHFANCS.V.P.FS.PPEDVLL.MIIAPI.L.PFLVT.V.VW.S
RetrocopyLELNAEEFDQGFPTPRAETIIFGTHQIHFANCSSVHPIFSGPPEDVLLTMIIAPISLLPFLVTPV<VWES
ParentalKDSEAQ
..SE.Q
RetrocopyQESEVQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1200 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000003045 1 retrocopy
retro_chof_1200 ,



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