>retro_chof_1339
ATGACCAGCTCTAATGAGTTCAAGCTGAACCAGCCACCTGAGGATGGCATCTCTTCAGTGAAGTTCAGCCCCAACACCTC
CCAGTTCCTGTTGGTCTCCTCCTGGGACACATTCATGTGCCTGTATGATGTGTCCGCCAACTCCATGCGACTCAAGTACC
AGCACACCAGCGCGGTTCTGTACTGCGCGTTCTACAATCCAACACTTGCCTGGAGTGGGGGATTAGATCATTGATTGAAA
ATGCATGATTTGAACACTGATCAAGAAAATCTAGTTGGAACCCATGATGCCCCTATCAGATGTGTTGAATACTGTCCGGA
AGTGAATGTGATGGTTACTGGAAGCTGGGATCAGACAGTTAAATTGTGGGATCCCAGAACTCCTTGTAATGCCAGAACCT
TCTCTCAGCCTGAAAAGGTATACACTCTCTTGGTGTCTGGAGACCGGTTGATCGTGGGGACGGCGGGCCGCAGAGTGTTG
GTCTGGGACTTAGGGAACATGGGCTATATGCAGCAGTGCCGAGAGTCCAGCCTCAAGCACCAGACCTGCTGCATACAGGC
CTTCCCAAACAAGCAGGGTTACGTGTTAGGCTCTATTGAAGGCGGGTGGTGGTTGCGTACTTGGACCCAAGCCCTGAAGT
ACAGAGGAAGAAGTATACCTTCAAATGTCACAGACTAAAGGAAAATAATATTGAGCAGATTTACTCAGTCAATGCCATTT
TGTTTCATAACATCCACAATATATTTGCCACAGGTGGTTCTGATGGGTTTGTAAATATTTGGGATCCCTTTAACAAAATG
TGGCTGTGCCAGTTCCATCGGTATCCCACTAGCATCGCTTCACTTGCCTTCAGCAATGACGGGACTACACTTCAATAGCA
TCATCATGTATGTATGAAATGGATGACACTGAACATCCTGAAGATGGTATCTTCATTCGCCAATTGACAGTTGCAGAAAC
AAAACCCAAGTCC
ORF - retro_chof_1339 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.99 % |
Parental protein coverage: |
99.09 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHA |
| MT.SNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDT...LYDV.ANSMRLKYQHT.AVL.CAFY.PT.A |
Retrocopy | MTSSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTFMCLYDVSANSMRLKYQHTSAVLYCAFYNPTLA |
|
Parental | WSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV |
| WSGGLDH.LKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA.TFSQPEKV |
Retrocopy | WSGGLDH*LKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNARTFSQPEKV |
|
Parental | YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEG-RVAVEYLD |
| YTL.VSGDRLIVGTAGRRVLVWDL.NMGY.QQ.RESSLK.QT.CI.AFPNKQGYVL.SIEG.RV.V.YLD |
Retrocopy | YTLLVSGDRLIVGTAGRRVLVWDLGNMGYMQQCRESSLKHQTCCIQAFPNKQGYVLGSIEG<RVVVAYLD |
|
Parental | PSPEVQKKKYAFKCHRLKENNIEQIYPVNAISIHNIHNTFAAGGSDGFVNIWDPFNKKRLCQFHRYPTSI |
| PSPEVQ.KKY.FKCHRLKENNIEQIY.VNAI..HNIHN.FA.GGSDGFVNIWDPFNK..LCQFHRYPTSI |
Retrocopy | PSPEVQRKKYTFKCHRLKENNIEQIYSVNAILFHNIHNIFATGGSDGFVNIWDPFNKMWLCQFHRYPTSI |
|
Parental | ASLAFSNDGTTL-AIASSYMYEMDDTEHPEDGIFIRQVTDAETKPKS |
| ASLAFSNDGTTL..IASS.MYEMDDTEHPEDGIFIRQ.T.AETKPKS |
Retrocopy | ASLAFSNDGTTL<SIASSCMYEMDDTEHPEDGIFIRQLTVAETKPKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1339 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.