RetrogeneDB ID:

retro_chof_15

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_255918:127..1267(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSCHOG00000012286
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000003460
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_15
ACCTCAGATTTTCCTGTTCTTGATCCAAGCTGGACTGCTCAAGAAGAAATGGCCCTTTTAGAAGCTGTGATGGACTGTGG
CTTTGGAAATTGGCAGGATGTAGCCAATCAGATGTGTACCAAGACCAAGGAGGAGTGTGAGAAGCACTATATGAAACATT
TCATCAACAACCCTCTGTTTGCATCTACCTTGCTGAACCTGAAGCAAGCAGAGGAAGCAAAAACTGCTGACACAGCAATT
CCGTTTCACTCTACGGATGACCCTCCCCGGCCTAACTTTGACTCTCTGCTTTCTCGGGACATGGCAGGATACATGCCAGC
TCGAGCAGACTTCATTGAGGAGTTTGACAATTATGCAGAATGGGACTTGAGAGACATCGATTTTGTTGAAGATGACTCGG
ACATTTTACATGCTCTGAAGATGGCTGTGGTAGATATCTATCATTCCAGGTTAAAAGAGAGACAAAGGCGAAAAAAAATT
ATAAGAGACCATGGATTAATCAACCTTAGAAAGTTTCAGTTAATGGAACGGCGGTATCCCAAGGAGGTCCAAGACCTTTA
TGAAACAATGAGGCGATTTGCAAGGATTGTGGGGCCGGTGGAGCATGACAAGTTCATTGAAAGCCATGCATTGGAATTTG
AACTCCGAAGGGAAATCAAGAGGCTCCAGGAATATAGGACAGCAGGCATTACCAGTTTTTGTAGTGCCAGAACCTATGAT
CACCTCAAGAAGACAAGAGAGGAGGAACGCCTTAAACGCACCATGCTCTCCGAAGTTCTCCAGTATATCCAGGACAGTAG
TGCTTGCCAGCAGTGGCTCCGCCGACAAGCCGACATTGACTCTGGCCTCAGTCCTTCCATTCCAATGGCTTCAAATTCAG
GTAGACGGAGTGCACCACCCTTGAACCTCACTGGCCTCCCTGGCACAGAGAAGCTGAATGAAAAAGAAAAAGAGCTCTGT
CAGATGGTGAGGTTGGTCCCTGGAGCCTATTTAGAATACAAATCTGCTCTATTGAATGAATGTAACAAGCAAGGAGGCTT
GAGACTGGCACAGGCAAGAGCACTGATCAAGATAGACGTGAACAAAACCCGGAAAATCTATGATTTCCTCATCCGAGAAG
GATACATCACTAAAGCCTGA

ORF - retro_chof_15 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 86.53 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQA
TSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQA
RetrocopyTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQA
ParentalEEAKTADTAIPFHSTDDPPRPNFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALK
EEAKTADTAIPFHSTDDPPRPNFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALK
RetrocopyEEAKTADTAIPFHSTDDPPRPNFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALK
ParentalMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHA
MAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHA
RetrocopyMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHA
ParentalLEFELRREIKRLQEYRTAGITSFCSARTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADID
LEFELRREIKRLQEYRTAGITSFCSARTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADID
RetrocopyLEFELRREIKRLQEYRTAGITSFCSARTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADID
ParentalSGLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLA
SGLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLA
RetrocopySGLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLA
ParentalQARALIKIDVNKTRKIYDFLIREGYITKA
QARALIKIDVNKTRKIYDFLIREGYITKA
RetrocopyQARALIKIDVNKTRKIYDFLIREGYITKA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_15 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000003460 2 retrocopies
retro_chof_15 , retro_chof_2113,
Nomascus leucogenys ENSNLEG000000026461 retrocopy



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