>retro_chof_1552
TCCCCTGAATATGTTGAAAAGGCTAAGTGGTCTCCAGTCCTGCCTGGGGAGGAAAGCCAGCTGTGTCAGACAGTGGTCAC
TGTGGGTGAAGAATGCCAACAAAGCCTGCCTCAGACAGAAGTGATGGACCTGAAGTACAGCTTCAGATGATGGAGAAATT
GATAAGTTCAAGCCAAGAAATTATCAAAGTGCTCTTGTGTGTCATTCAAGAGCTAGAAAAGAAGTATCTCATGGAGAAGG
GCTTTCACATGGGACTGGGCAAGGCACAGCTAATAGTAACACATGCAGAAACAGTGTGCATATTGCCTATAGTGTGGATC
AGGATTCTAAACAGCAAGAAGACAAATTCCAACCAGTTCTGAGGAAACTCCATCCTACTTAGGAAACTCAGGTTGCACAT
TTGCCTTATTCTTGAGAGACTTATTCTGCAACTCCCAAGCAAAAATCCAAAACTGAATCTAAAAATCATTGTGGAATGTG
GAAACTCTGGTTTCTT
ORF - retro_chof_1552 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.83 % |
Parental protein coverage: |
58.3 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SPECGEKAPQAPAPPAEEGQLCTAAVAVGDECQQIVPQTEVVDLK-AQLQMMENLISSSQETIKVLLGVI |
| SPE..EKA...P..P.EE.QLC...V.VG.ECQQ..PQTEV.DLK..QLQMME.LISSSQE.IKVLL.VI |
Retrocopy | SPEYVEKAKWSPVLPGEESQLCQTVVTVGEECQQSLPQTEVMDLK<VQLQMMEKLISSSQEIIKVLLCVI |
|
Parental | QELEKGE-AHREGLSYRTGQDTANCDTCRNSACIIYSVELDFKQQEDKLQPVLKKLHPIEEAQVAPSPYS |
| QELEK....H.EGLS..TGQ.TAN..TCRNS..I.YSV..D.KQQEDK.QPVL.KLHP..E.QVA..PYS |
Retrocopy | QELEKKY<SHGEGLSHGTGQGTANSNTCRNSVHIAYSVDQDSKQQEDKFQPVLRKLHPT*ETQVAHLPYS |
|
Parental | QETYSATPKQKSKTESKKH-GRWKLWFL |
| .ETYSATPKQKSKTESK.H.G.WKLWFL |
Retrocopy | *ETYSATPKQKSKTESKNHCGMWKLWFL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1552 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.