RetrogeneDB ID:

retro_chof_1606

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_33704:1929..2419(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C2orf68
Ensembl ID:ENSCHOG00000004242
Aliases:None
Description:chromosome 2 open reading frame 68 [Source:HGNC Symbol;Acc:34353]


Retrocopy-Parental alignment summary:






>retro_chof_1606
ATGGAGGTGGTGCCAGACCTCAGGCCAGGATTCTGCTGCAAGCCTGGCGGGCAGCTGGACATGAGCCACAGCTTCACGCA
CCATATCCAGCAGAACAAGCTCAGCTGGGACGACGACGAGAAGGAAGAAGGTAAAGCAGGCGGCCAAGGAGAAGGTGGGA
AGGTGGCACACGCCTGCGCTGACACGCCACGAAAGCCCAACCTGCAAGTACCTGCTGTGACTCTGCGAGGACTCTACTGT
CCGAGCAACTCAGTCTACAGAAGTCCAGCAAAAGCAGCAGTAGTGGTGGCTTCAAGCTGGAGGCTTCCGGGTATCAGCTC
TTCTTCTTAGAATCGGGGCCAACAGCGGAGAGGTCACATCAGTTATCATGTATCAGGATGATCATCCAGAAATGGTGAGT
GAGGAGGTGTCAGCCCACACGCCTCTGGATCCACCCATGCGAGAGGCCCTCAAGTTGTGCATCCAAGAGGAGACTGCAAA
GCACCAGAGC

ORF - retro_chof_1606 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.79 %
Parental protein coverage: 98.77 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMEVVPDLRPGFCCKPGGQLDMSHSFTHHIQQNKLSWD-DDE-KKVKQAAKEKVGRWHTPALTPRK-PNLQ
MEVVPDLRPGFCCKPGGQLDMSHSFTHHIQQNKLSWD.D...KKVKQAAKEKVGRWHTPALT....P...
RetrocopyMEVVPDLRPGFCCKPGGQLDMSHSFTHHIQQNKLSWDDDEK>KKVKQAAKEKVGRWHTPALTRHESPTCK
ParentalYLL-LCDDST-RPSNPDY-EESGESSSSGGSELEPSGHQLFCLE-YEADSGEVTSVIVYQDDDPERVIEE
YLL.LC.DST..PSN..Y...S..SSSSGG..LE.SG.QLF.LE...A.SGEVTSVI.YQDD.PE.V.EE
RetrocopyYLL*LCEDST<CPSNSVY<QKSSKSSSSGGFKLEASGYQLFFLE<IGANSGEVTSVIMYQDDHPEMVSEE
ParentalVSAHTPLDPPMREALKLRIREEIAKRQS
VSAHTPLDPPMREALKL.I.EE.AK.QS
RetrocopyVSAHTPLDPPMREALKLCIQEETAKHQS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1606 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000004242 1 retrocopy
retro_chof_1606 ,
Otolemur garnettii ENSOGAG000000338171 retrocopy



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