RetrogeneDB ID: | retro_chof_1615 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_34081:930..1598(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BYSL | ||
Ensembl ID: | ENSCHOG00000011476 | ||
Aliases: | None | ||
Description: | bystin-like [Source:HGNC Symbol;Acc:1157] |
Percent Identity: | 84.28 % |
Parental protein coverage: | 51.72 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | WEQILYITEPEAWTAAAMYQATRIFASNLKERMAQRFYNL-VLLPRVRDDIAEYKRLNFH-LYMALKKAL |
WEQILY.TEPEA.TAAAMYQATRIF.SNLKE.MAQRFYNL.VLLP.V.DDIAEYK.LNF..LYMALKKAL | |
Retrocopy | WEQILYVTEPEASTAAAMYQATRIFTSNLKEHMAQRFYNL<VLLP*V*DDIAEYKCLNFY<LYMALKKAL |
Parental | FKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKY |
FKPGAWFKGILIPLC.SGTCTLR.AIIVGSI.TK.SI.VLHSSAA.LK.AE.EYS.ANSI.L.LLLDKKY | |
Retrocopy | FKPGAWFKGILIPLCDSGTCTLRKAIIVGSIVTKRSIRVLHSSAAVLKTAEIEYSSANSICLLLLLDKKY |
Parental | ALPYRVLDALVFHFLGFRTEKRKLPVLWHQCLLTLVQRYKAD-LAKDQKEALLELLRLQPHPQLSPEIRR |
ALPY.VLDALVFHFLGFRTEK.KL..LW.QCLLTLVQ.YKAD.LA.DQKEALL.LL.LQPHPQ.SPEIR. | |
Retrocopy | ALPY*VLDALVFHFLGFRTEKHKLLMLWRQCLLTLVQPYKAD<LATDQKEALLVLLWLQPHPQ-SPEIRC |
Parental | ELQSAV-PRDVEDVPINMD |
EL..AV.PRDVEDVPINMD | |
Retrocopy | EL*NAV<PRDVEDVPINMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010101 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011476 | 1 retrocopy |
retro_chof_1615 ,
|
Macropus eugenii | ENSMEUG00000000759 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017567 | 1 retrocopy |