RetrogeneDB ID:

retro_chof_1628

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_34567:8491..9246(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GMPR2
Ensembl ID:ENSCHOG00000001231
Aliases:None
Description:guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:4377]


Retrocopy-Parental alignment summary:






>retro_chof_1628
ACCATCTGGCAGCCAGCTCAGGCACGAGTTCTTCTGACTTTGAGCAGCTGGAACAAATCCTGGAAGCTATTCCTCAGGTG
AAATATGTATGCCTGGATGTGGCAAATGGCTACTCTGAACACTTTGTTAAATGTGCAAAGGATGTGCAGAAGCATTTCCC
CCAACACACCATCATGGCAGGGAATGTGGTAACAGAAGAGATGGTGGAAGAACTGATCCTCTCAGGGGCTGACATCATCA
AAGTGGGAATTGGGCCAGGCTCTGTGTGTACCACCCGAAAGAAAACTGGAGTGGGGTATCTGCAGCTCAGTGCAGTAACG
GAGCATGCAGATGCTGCTCATGGTCTCTAAGGCCACATCATCTCAGATGGAGGCTGCAGCTGTCCTGGGGATGTGGCCGA
GGCTTTTGGAGCAGGGGCTGACTTTGTGATGCTGGGTGGCATGCTGGCTGGGCACAGCAAGTCAGGTGGTGAGCTCATTG
AGAGGGATGGCAAGAAGTACAAGCTGTTCTACAGAATGAGTTCTGAAATGGCTATGAAGAAGTGTGCTGGGGGCGTGGCT
GAGTACAGGGCCTCAGAGGGCAAGACAGTGGAGGTTCCCTTTAAAGGAAATGTGGAACACACCATCCGAGACATCCTTGG
AGGGATTTGCTCCACATGTACCTACGTCGGAGCAGCTAAGCTAAAGGAGTTGAGCTGGAGAACTACCTTCATCCATGTCA
CCCAGCAGGTGAACCCGATCTTCAATGATGACAAA

ORF - retro_chof_1628 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.33 %
Parental protein coverage: 72.05 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSIWQPAQA-VLLTLSSWKRSWKLF-PR-KYICLDVANGYSEHFVECVKEVRKRFPQHTIMAGNVVTGEMV
.IWQPAQA.VLLTLSSW..SWKLF.P..KY.CLDVANGYSEHFV.C.K.V.K.FPQHTIMAGNVVT.EMV
RetrocopyTIWQPAQARVLLTLSSWNKSWKLF<PQVKYVCLDVANGYSEHFVKCAKDVQKHFPQHTIMAGNVVTEEMV
ParentalEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAG
EELILSGADIIKVGIGPGSVCTTRKKTGVGY.QLSAV.E.ADAAHGL.GHIISDGGCSCPGDVA.AFGAG
RetrocopyEELILSGADIIKVGIGPGSVCTTRKKTGVGYLQLSAVTEHADAAHGL*GHIISDGGCSCPGDVAEAFGAG
ParentalADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMNKYAGGVAEYRASEGKTVEVPFKGDVEHTI
ADFVMLGGMLAGHS.SGGELIERDGKKYKLFY.MSSEMAM.K.AGGVAEYRASEGKTVEVPFKG.VEHTI
RetrocopyADFVMLGGMLAGHSKSGGELIERDGKKYKLFYRMSSEMAMKKCAGGVAEYRASEGKTVEVPFKGNVEHTI
ParentalRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFNDDK
RDILGGI.STCTYVGAAKLKELS.RTTFI.VTQQVNPIFNDDK
RetrocopyRDILGGICSTCTYVGAAKLKELSWRTTFIHVTQQVNPIFNDDK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1628 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000001231 1 retrocopy
retro_chof_1628 ,
Echinops telfairi ENSETEG000000183951 retrocopy
Microcebus murinus ENSMICG000000017361 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000023361 retrocopy



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