RetrogeneDB ID: | retro_chof_170 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_3816:14584..14920(-) | ||
Located in intron of: | ENSCHOG00000006230 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSCHOG00000008378 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 72.32 % |
Parental protein coverage: | 98.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AIQNLHSFDPFADASKDDDLLPAGTEDYIHIRNQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG- |
AIQNLHS.DPFA.A.KD.DLL.AGTEDYIH.R..QR...KTL.T...IADDYDK.KLVKAFK..FA.N.. | |
Retrocopy | AIQNLHSPDPFAYAGKDNDLLSAGTEDYIHVRIKQRKDKKTLITTRAIADDYDKHKLVKAFKMEFASNSK |
Parental | TVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
...EHPE.GE.IQLQG.Q.KNIC.FLVE.GLAKDD.LKVHGF | |
Retrocopy | SITEHPEHGEMIQLQGKQHKNIC*FLVETGLAKDDRLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008378 | 7 retrocopies |
retro_chof_1435, retro_chof_170 , retro_chof_2236, retro_chof_2293, retro_chof_2625, retro_chof_320, retro_chof_708,
|
Dipodomys ordii | ENSDORG00000013853 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000032769 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000033765 | 15 retrocopies | |
Sorex araneus | ENSSARG00000006287 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005729 | 1 retrocopy |