RetrogeneDB ID: | retro_chof_1768 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_379828:416..755(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSCHOG00000003746 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 70.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKD-VKDGKYSQVLANGL |
GVGRRYAHVVLR.AD..LTKRAGELTEDE.ERV.T..Q.PRQY.IPDWFLNRQ.D..K...YSQVLAN.. | |
Retrocopy | GVGRRYAHVVLRAADSGLTKRAGELTEDEEERVVTTVQSPRQYEIPDWFLNRQED<LKERRYSQVLAN-- |
Parental | DNKLREDL-ERLKKIRAHRGLRHFWGLRVRGQHTKTT-GRRGRTVGVSKKK |
..KL.EDL.E.LKKI.AHRGL..FW.LRV.G.H..T..G..G..VGVSKKK | |
Retrocopy | --KLCEDL<EHLKKIWAHRGLQSFWDLRVQGWHAMTV<GCCGHVVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003746 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy |