>retro_chof_1831
TTCGGGGCATCGAGCTGCAATGGGTGCAAGGGCTTCTTCAGACGCAGCATACGCAAGAGTCACGTTTATTCCTGCAGGTT
CAGTCGTCAATGTGTTGTTGACAAGGACAAAAGGAATCAATGTAGATATTGTCGATTAAGAAAATGTTTTAGTGCAGGAA
TGAAAAAAGAAGCTGTGCAAAATGAACGCGATAGAATAAGCACCAGAAGAAGCACGTTTGATGGCAGCAATATTCCTTCC
ATTAACACGCTGGCACAGGCCGAAGCTCTGTCTCGCCAGATCCCTGTCTCAAGCCCTGGGGCAAGCACTGACATAAATGT
GAAGAAAATTGCAAGTATTGCTGATGTCTGTGAATCTATGAAACAGCAACTCTTAGTCTTGGTGGAATGGGCTAAATATA
TCCCTGCCTTCTGTGAGTTACCATTGGATGATCAGGTGGCACTGTTGAGAGCTCATGCAGGGGAACATTTATTGCTTGGA
GCTACCAAGCGATCCATGGTGTATAAAGATATTTTGCTTTTGGGAAACAACTACGTTATCCACCACAACAGCTGTGAAGT
AGAGATCAGTCGTGTGGCCAATCGGATTCTAGATGAGCTAGTCAGACCATTTCAAGAAATTCAGATTGATGACAATGAAT
ACGCTTGTTTGAAGGCAATTGTATTTTTCGACCCAGATGCAAAAGGACTCAGTGACCCAGTAAAAATTAAGAACATGTGA
TTCCAAGTTCAGATTGGTTTGGAGGACTACATCAATGACCGGCAGTACGACTCCCGGGGGAGATTTGGGGAGCTGCTTCT
GCTTCTGCCCACCCTGCAGAGCATCACCTGGCAGATGATTGAACAAATACAGTTTGTTAAACTTTTTGGGATGGTTAAAA
TTGACAGCCTACTTCAGGAGATGCTACTGGGTGGTGCTTCCAACGATGCTGGCCATCTCCATCATCCAATGCACCCACAT
TTGTCTCAAGATCCATTAACTGGACAGACTATCCTTATAAGTTCCCTGTCAACACTGGTTCATACAGACCAGATCTCAAC
TCCTGAA
ORF - retro_chof_1831 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.71 % |
Parental protein coverage: |
78.2 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRR |
| .GASSC.GCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCF.AGMKKEAVQNERDRISTRR |
Retrocopy | FGASSCNGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFSAGMKKEAVQNERDRISTRR |
|
Parental | STFDGSNIPSINTLAQAEALSRQIPVSSPGASTDINVKKIASIADVCESMKQQLLVLVEWAKYIPAFCEL |
| STFDGSNIPSINTLAQAEALSRQIPVSSPGASTDINVKKIASIADVCESMKQQLLVLVEWAKYIPAFCEL |
Retrocopy | STFDGSNIPSINTLAQAEALSRQIPVSSPGASTDINVKKIASIADVCESMKQQLLVLVEWAKYIPAFCEL |
|
Parental | PLDD-VALLRAHAGEHLLLGATKRSMVYKDILLLGNNYVIHRNSCEVEISRVANRILDELVRPFQDIQID |
| PLDD.VALLRAHAGEHLLLGATKRSMVYKDILLLGNNYVIH.NSCEVEISRVANRILDELVRPFQ.IQID |
Retrocopy | PLDDQVALLRAHAGEHLLLGATKRSMVYKDILLLGNNYVIHHNSCEVEISRVANRILDELVRPFQEIQID |
|
Parental | DNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMI |
| DNEYACLKAIVFFDPDAKGLSDPVKIKNM.FQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMI |
Retrocopy | DNEYACLKAIVFFDPDAKGLSDPVKIKNM*FQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMI |
|
Parental | EQIQFVKLFGMVKIDSLLQEMLLGGASNDAGHLHHPMHPHLSQDPLTGQTILISSMSTLVHTDQISTPE |
| EQIQFVKLFGMVKIDSLLQEMLLGGASNDAGHLHHPMHPHLSQDPLTGQTILISS.STLVHTDQISTPE |
Retrocopy | EQIQFVKLFGMVKIDSLLQEMLLGGASNDAGHLHHPMHPHLSQDPLTGQTILISSLSTLVHTDQISTPE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1831 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.