>retro_chof_1896
AGAAATAGTGTACTATGGTCAGAGATGTTAGATGTCAATATGAAGGAGTCTTTAACAACCAGAGAAATCAAAAGTTAGAA
GGCAATATATGAAATGTCCCGAGGTGAAAAGGATTTAATTAAGGATCTCAAGCTTGCAAGAAAGGCCTACCATGACCCCA
TGTTAAAGTTGTCTATTATGACAGAAGAAGAGCTCACACATATATTTGGTGATTTGGATGCTTACATACCTTTACATGAA
GATTTGTTGGCAAGAATAGGAGAAGCAACCAAGCCTGATGGAACAGTAGAGCAGATTGGTCATATTCTTGTGAACTGGTT
GCCAGGCTTGAATGCCTACAGAGGCTATTGTAGTAACCAGTTGGCAGCCAAAGCTCTTCTTGATCAAAAGAAACAAGATC
CAACAGTCCAAGACTTCCTCCAGCGATGTCTTGAGTCTCCTTTCAGTCGAAAACTAGATCTTTGGAGCTTCCTAGATATT
CCTCGAAGTCACCTAGTCAAGTACCCTTTACTGTTAAAAGAAATTCTTAGACACACTCCAAAAGACCACCCTGATGTTCA
GCTTCTGGAGGAAGCTGTATTGATAATACAAGGAGTTCTCTCTGATATAAACTTGAAGAAAGGTGAATCAGAATGCCAGT
ATTACATTGACAAACTGGAGTATCTGGATGAAAAGCAGAAGGATCCTAGAATTGAAGCAAGCAAAGTATTACTTTGCCAT
GGGGAATTGAAGAATAAGAGCGGACATAAACTTTACATTTTCCTGTTTCAAGACATCTTGGTTTTGACTCGGCCTGTTAC
ACAGAATGAGCGTCACTCTTACCAAGTTTACCGGCAGCCAATCCCAGTCCAAGAGCTGGTCTTAGAAGACCTGCAGGATG
GAGATGTGAGAATGGGAGGATCCTTTCGA
ORF - retro_chof_1896 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.03 % |
Parental protein coverage: |
60.28 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RNSVLWSEMLDVNMKESLTTREIKRQEAIYEMSRGEKDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFG |
| RNSVLWSEMLDVNMKESLTTREIK...AIYEMSRGEKDLI.DLKLARKAYHDPMLKLSIM.EEELTHIFG |
Retrocopy | RNSVLWSEMLDVNMKESLTTREIKS*KAIYEMSRGEKDLIKDLKLARKAYHDPMLKLSIMTEEELTHIFG |
|
Parental | DLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFL |
| DLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDP.VQDFL |
Retrocopy | DLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPTVQDFL |
|
Parental | QRCLES-FSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHPDVQLLEEAVLIIQGVLSDINLKKGES |
| QRCLES.FSRKLDLWSFLDIPRS.LVKYPLLLKEILRHTPKDHPDVQLLEEAVLIIQGVLSDINLKKGES |
Retrocopy | QRCLESPFSRKLDLWSFLDIPRSHLVKYPLLLKEILRHTPKDHPDVQLLEEAVLIIQGVLSDINLKKGES |
|
Parental | ECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQP |
| ECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVT.NERHSYQVYRQP |
Retrocopy | ECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTQNERHSYQVYRQP |
|
Parental | IPVQELVLEDLQDGDVRMGGSFR |
| IPVQELVLEDLQDGDVRMGGSFR |
Retrocopy | IPVQELVLEDLQDGDVRMGGSFR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1896 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.