RetrogeneDB ID: | retro_chof_1923 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_42405:5234..5647(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000011097 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.75 % |
Parental protein coverage: | 72.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DVFSLLAQKQVMWREGMEFLRNQSPGMEIACKKQEMIFMQLIYRNDNSEDASLRISYTQKNSFKFNYLQE |
.V.S.LAQ....WREGM.FL.NQ.PG...ACKKQEMIFMQL.YR.DNS...SL.IS.TQKNSF..NYL.E | |
Retrocopy | NVLSQLAQGEEVWREGMRFLQNQNPGRKRACKKQEMIFMQLTYRKDNSDIMSLHISHTQKNSFQCNYLHE |
Parental | DSTLRSAVTQHALIPMRKRPYLRKPFGKVLSEQS-SFNKHEQFHTGSKSYECHRNVKAFIKNAGHKEYD |
DST.RS.VTQHALIPMRK.PYL.K..GK.LS.QS..FN.H.Q..T.S..YE.H...K.FIK..GHK.Y. | |
Retrocopy | DSTVRSTVTQHALIPMRKKPYLSKSLGKLLSDQS<IFN*HKQINTRSNTYEFHGCTKSFIKSFGHKQYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007736 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011097 | 2 retrocopies |
retro_chof_1923 , retro_chof_228,
|
Choloepus hoffmanni | ENSCHOG00000011899 | 1 retrocopy | |
Homo sapiens | ENSG00000196946 | 1 retrocopy |