RetrogeneDB ID: | retro_chof_1945 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_43031:8106..8840(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CEPT1 | ||
Ensembl ID: | ENSCHOG00000007908 | ||
Aliases: | None | ||
Description: | choline/ethanolamine phosphotransferase 1 [Source:HGNC Symbol;Acc:24289] |
Percent Identity: | 81.78 % |
Parental protein coverage: | 58.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VQLGTNP--DWMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP |
..LG..P..D....CCFA..FMF.CAHWQT.VSGTLRF.IIDVTE.QIFIIIMHLL.VIGGPPFWQSMIP | |
Retrocopy | LELGNKP*LDVFCCCCFAEIFMFNCAHWQTNVSGTLRFRIIDVTEMQIFIIIMHLLVVIGGPPFWQSMIP |
Parental | VLNIQMKIFPALCTVAGTIFSCTNY-FRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVIILAAMIYKKSAV |
VL.IQMK.F.ALCTVAGTIFSCTNY.F.VIFTG.VGKNGS.IAGT....PFLHIGSVI.LAAMIYKKSAV | |
Retrocopy | VLYIQMKFFHALCTVAGTIFSCTNY<FHVIFTGRVGKNGSMIAGTTXXXPFLHIGSVILLAAMIYKKSAV |
Parental | QLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLDQYFNSFIDEYIVLWIALVF |
QL.EKHPCL.ILTFGFVSAKITNKLVVA...KSEMHLHDT.FI.PALLFLDQYFNSFI.EYIVLWIA..F | |
Retrocopy | QLIEKHPCLCILTFGFVSAKITNKLVVACKMKSEMHLHDTVFIDPALLFLDQYFNSFI-EYIVLWIAPFF |
Parental | SFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH |
SFFDLI.YCVSVCN..A.HLHIHVFRIKVS.AHS.HH | |
Retrocopy | SFFDLICYCVSVCN*TAFHLHIHVFRIKVSIAHSDHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007908 | 3 retrocopies |
retro_chof_1945 , retro_chof_241, retro_chof_2710,
|
Choloepus hoffmanni | ENSCHOG00000013377 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017013 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010799 | 1 retrocopy |