RetrogeneDB ID:

retro_chof_1970

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_43816:6750..8733(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:WWC2
Ensembl ID:ENSCHOG00000008102
Aliases:None
Description:WW and C2 domain containing 2 [Source:HGNC Symbol;Acc:24148]


Retrocopy-Parental alignment summary:






>retro_chof_1970
TTAACGAAGCCCTTGTCGTTTGCTGATTGTGTTGGGGATGAGCTGCCATGGGGATGGGAAGCAGGGTTTGACCCTCAGAT
TGGTGTCTACTATATCGATCACATCAACAAAATCACACAGATAGAAGATCCAAGAAAACAATGGCGGGGGGAACAGGAGA
AAATGCTGAAGGACTATCTCTCGGTGGCTCAGGATGCACTCAGGACGCAGAAGGAGCTGTACCATGTGAAGGAGCAAAGA
CTGGCTTTGGCCTTGGATGAATATGTACGATTAAATGATGCTTACAAGGAAAAGTCGAGCTCTCGCACAAGCTTATTCTC
AGGATCTTCGTCCAGTACTAAATATGATCCCGATATTTTAAAAGCTGAGATCTCCACTACACGATTAAGGGTTAAAAAGC
TGAAGAGAGAACTCTCACAGATGAGGCAAGAATTGCTCTATAAAGAACAAGGCTTTGAAACATTGCAACAAATTGATAAA
AAAATGTCTGGAGGCCAGAGTGGGTATGAACTTAGTGAAGCCAAAGCCATTCTAACTGAACTGAAGTCTATCAGAAAGGC
TATTAGCTCAGGAGAAAAAGAAAAACAAGATCTGATGCAGAGTCTTGCTAAGCTGCAGGAGCGGTTTCATTTGGACCAGA
GCATTGGCAAATCTGAGCCAGACTTGAGATCCAGTCCTGTGAATTCTCATCTGTCTCTCTCCAGACAGACTCTTGATGCT
GGGTCACAAACCAGCATTTCCGGAGATATTGGAATGAGAAGTAGATCAAATTTAGCTGAAAAGGTCAGGCTAAGCCTACA
GTATGAAGAAGCCAAAAGAAGTATGGCCAACTTAAAAATTGAACTGTCAAAATTGGACAGTGAGGCCTGGCCCGGGGCGC
TGGATATTGAGAAAGAGAAGCTGATGCTGATCAATGAAAAAGAAGAACTTTTGAAAGAGCTTCAGTTTGTCACTCCCCAG
AAGCGCACTCAAGATGAGCTGGAACACCTGGAAGCCGAGCGGCAGCGGCTGGAGGAGGAGCTGCTGTCCGTGAGGAGTAC
CCCAAGCCGAGCTCTGGCGGAGAGGTTGAAATCGGAAGAGAGAAGAAAAGAGCTGCTACAGAAACTTGAAGAAACTACTA
AATTAACTACTTATTTGCATTCACAACTTAAAAGCCTGTCCGCCAGCACCCTGTCCATGTCTTCTGGGAGCAGCCTGGGC
TCCCTGGCATCCAATCGGGGATCCCTGAACACCTCCAGCAGAGGGTCACTCAATTCCCTCAGTTCCAGTGAGCTCTATTA
CAACAGTCAGGGTGATCAGATAGAAGTGGACTATCAGTATAAACTGGACTTTCTTCTGCAAGAGAAAGGTGGTTACATTC
CTTCTGGACCCATCACCACCATCCATGAAAATGAGGTGGTCAAGTCCCCCAGCCAGCCTGGTCAGACTGACCCCTGTGGG
GCAGCTACTGCAGCTACAGGCCATATTCACCCGCTGACTGAGGCCCCCAAGTCTGTGACATCCCTGTCCTCAAGGTCTTC
CCTTTCTTCCTTATCCCCTCCGGGCTCTCCCTTGGCTTTGGAAGGCCCATTTCCGATGTCTTCTCCAGACACCCATCTCC
ATCAGTTCACTGCTGACTTTGAAGACTGTGAATTGAGTAGCCATTTTGCAGACATTGGCCTCAGTGAAAATCAGATATTG
CTGGATTCTGATTCAGGAGGAGCCTCCCAGTCTCTTTTAGAGGACAAAGACCTTAACGAATGCACTAGGGAAGCATTATA
TGAAGGAACCACAGAAGTGGAAAAAACTTTACCAAGAAGAAGAGCAAGCCAATTGCTTGGGGATAAAACAGCTTGTGTGT
CTGCTGCTATATCTGATGAGTCAGTGGCTGGAGACAGTGGTGTCTATGAAGCTTTCACGAAACAGCCTAGTGAAATTGAA
GATGTCACTTACAGTGAAGATGATGTTGCCATTGTAGAGACTGCCCAGGTGCAGATAGGACTC

ORF - retro_chof_1970 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.73 %
Parental protein coverage: 58.05 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLTKPLSFADCVGDELPWGWEVGFDPQIGVYYIDHINKTTQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQ
LTKPLSFADCVGDELPWGWE.GFDPQIGVYYIDHINK.TQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQ
RetrocopyLTKPLSFADCVGDELPWGWEAGFDPQIGVYYIDHINKITQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQ
ParentalKELYHVKEQRLALALDEYVRLNDAYKEKSSSRTSLFSGSSSSTKYDPDILKAEISTTRLRVKKLKRELSQ
KELYHVKEQRLALALDEYVRLNDAYKEKSSSRTSLFSGSSSSTKYDPDILKAEISTTRLRVKKLKRELSQ
RetrocopyKELYHVKEQRLALALDEYVRLNDAYKEKSSSRTSLFSGSSSSTKYDPDILKAEISTTRLRVKKLKRELSQ
ParentalMKQELLYKEQGFETLQQIDKKMSGGQSGYELSEAKAILIELKSIRKAISSGEKEKQDLMQSLAKLQERFH
M.QELLYKEQGFETLQQIDKKMSGGQSGYELSEAKAIL.ELKSIRKAISSGEKEKQDLMQSLAKLQERFH
RetrocopyMRQELLYKEQGFETLQQIDKKMSGGQSGYELSEAKAILTELKSIRKAISSGEKEKQDLMQSLAKLQERFH
ParentalLDQSIGKSEPDLKSSPVNSHLSLSKQTLDAGSQTSISGDIGMRSRSNLAEKVRLSLQYEEAKRSMANLKI
LDQSIGKSEPDL.SSPVNSHLSLS.QTLDAGSQTSISGDIGMRSRSNLAEKVRLSLQYEEAKRSMANLKI
RetrocopyLDQSIGKSEPDLRSSPVNSHLSLSRQTLDAGSQTSISGDIGMRSRSNLAEKVRLSLQYEEAKRSMANLKI
ParentalELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFVTPQKRTQDELEHLEAERQRLEEELLSVRRPPSR
ELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFVTPQKRTQDELEHLEAERQRLEEELLSVR..PSR
RetrocopyELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFVTPQKRTQDELEHLEAERQRLEEELLSVRSTPSR
ParentalALAERLKSEERRKELLQKLEETTKLATYLHSQLKSLSASTLSMSSGSSLGSLASSRGSLNTSSRGSLNSL
ALAERLKSEERRKELLQKLEETTKL.TYLHSQLKSLSASTLSMSSGSSLGSLAS.RGSLNTSSRGSLNSL
RetrocopyALAERLKSEERRKELLQKLEETTKLTTYLHSQLKSLSASTLSMSSGSSLGSLASNRGSLNTSSRGSLNSL
ParentalSSSELYYNSQGDQIDVDYQYKLDFLLQEKGGYIPSGPITTIHENEVVKSPSQPGQTDPCGAATAATGHIH
SSSELYYNSQGDQI.VDYQYKLDFLLQEKGGYIPSGPITTIHENEVVKSPSQPGQTDPCGAATAATGHIH
RetrocopySSSELYYNSQGDQIEVDYQYKLDFLLQEKGGYIPSGPITTIHENEVVKSPSQPGQTDPCGAATAATGHIH
ParentalPLTEAPKSVTSLSSRSSLSSLSPPGSPLALEGPFPM-SPDTHLHQFTADFEDCELSSHFADVGLSENQIL
PLTEAPKSVTSLSSRSSLSSLSPPGSPLALEGPFPM.SPDTHLHQFTADFEDCELSSHFAD.GLSENQIL
RetrocopyPLTEAPKSVTSLSSRSSLSSLSPPGSPLALEGPFPMSSPDTHLHQFTADFEDCELSSHFADIGLSENQIL
ParentalLDSDSGGASQSLLEDKDLNECTREALYEGTTEVEKTLPRRRASQLLGDKTACVSAAVSDESVAGDSGVYE
LDSDSGGASQSLLEDKDLNECTREALYEGTTEVEKTLPRRRASQLLGDKTACVSAA.SDESVAGDSGVYE
RetrocopyLDSDSGGASQSLLEDKDLNECTREALYEGTTEVEKTLPRRRASQLLGDKTACVSAAISDESVAGDSGVYE
ParentalAFMKQPSEIEDVTYSEDDVAIVETAQVQIGL
AF.KQPSEIEDVTYSEDDVAIVETAQVQIGL
RetrocopyAFTKQPSEIEDVTYSEDDVAIVETAQVQIGL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST - click to see more details

Choloepus hoffmanni was not studied using EST data.

TSS - click to see more details

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab - click to see more details

retro_chof_1970 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000008102 1 retrocopy
retro_chof_1970 ,


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