>retro_chof_1982
CTTTTGCTACCAGACGCTATTCCCAAAACTGTTAGTACCCTACCTTCAAAGGAAGCTCTAACAGTTCAGCAGAAACCAAT
GCCTCTCTGTGGCAAGGACAGGACATCTGTAGTACCTGTGCAGAATCTTGAACACAGCTGTATGTCACCTGACTCCTCCA
GTCTGGAAAATAAAAGTTTAGAAGTGAGCGATACACGTTTTCACAGCTTCTCATTTTACGAACTGAAGAATGTCACAAAT
AACTTTGACAAACAACCCCTTTCTGCTGGTGGTAATAAAATGGGAGAGGGAGAACTTGGAGTTGTGCATAAAGGCTAAGT
GAACAACAAAACCGTGGCAGTGAAGAAGCTTGCAGCCATGGTTGACATTAATACTGAAGAACTGAAACAACAGTTTGATC
AAGAAATAAAAGTAATGGCAAATTGTCAACATGAAAACTTAGTAGAACTACTTGGTTTTTCTAGTGATGGTGATGACCTC
TGCTTAGTGTATGTTTACATGCCCAATGGATTACTGCTTGACAAACTGTCTTGCTTGGATGGTACTCCACCATTTTCATG
GCACATGCAATGCGAGATTGTTCAGGGTGCAGCTAATGGCATCAGTGTTTTTACATGAAAACTATCATATTCATAGAGAT
ATTAAAAGTGCAAATATCTTACTATAAGAAGCCTTTGTAGCCAAAATATCTGACTTTGGCCTTGCACGGGCTTCTGAGAA
GTTTGCTCAGACAATCATGACTAGCAGAATTGTGGGAACAACAGCTTACATGGCACCTGAAGCTCTATGAGGAGAAATAA
CACCCAAATCTGACATCTACAGTTTTGGTGTGGTTTTACTAGAAATAATAACTGGACTTCCAGCTATGGATGAACACCAT
GAACCTCAGTTATTATTAGATATCAAAGAAGAAATTGAAGATGAAGAAAAGACAATTGAAGATTATATTGATGTGAAGAT
GAATGATGTTGATTCCACTTCAGTTGAAATTATGTACTCTGTTGCTAGTCATGTCTTCATGAAAAGAAAAATAAGAGACC
AGACATTAAGAAGGTTCAACAGCTGCTGCTAGAGATGAGAGTC
ORF - retro_chof_1982 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.08 % |
Parental protein coverage: |
78.48 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | LLLPDAIPKTVNTLPSKEAITVQQKQMPLYGKDRTSVVPLQNLEQNCMSPDSSSLENKNLEVSDTRFHSF |
| LLLPDAIPKTV.TLPSKEA.TVQQK.MPL.GKDRTSVVP.QNLE..CMSPDSSSLENK.LEVSDTRFHSF |
Retrocopy | LLLPDAIPKTVSTLPSKEALTVQQKPMPLCGKDRTSVVPVQNLEHSCMSPDSSSLENKSLEVSDTRFHSF |
|
Parental | SFYELKNVTNNFDERPLSAGGNKMGEGGFGIVYKGYVNNKTVAVKKLAAMVDISTEELKQQFDQEIRVMA |
| SFYELKNVTNNFD..PLSAGGNKMGEG..G.V.KG.VNNKTVAVKKLAAMVDI.TEELKQQFDQEI.VMA |
Retrocopy | SFYELKNVTNNFDKQPLSAGGNKMGEGELGVVHKG*VNNKTVAVKKLAAMVDINTEELKQQFDQEIKVMA |
|
Parental | KCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIS-FLHENNH |
| .CQHENLVELLGFSSDGDDLCLVYVYMPNG.LLD.LSCLDGTPP.SWHM.C.I.QGAANGIS.FLHEN.H |
Retrocopy | NCQHENLVELLGFSSDGDDLCLVYVYMPNGLLLDKLSCLDGTPPFSWHMQCEIVQGAANGIS>FLHENYH |
|
Parental | IHRDIKSANILLDEAFVAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVL |
| IHRDIKSANILL.EAFVAKISDFGLARASEKFAQT.MTSRIVGTTAYMAPEAL.GEITPKSDIYSFGVVL |
Retrocopy | IHRDIKSANILL*EAFVAKISDFGLARASEKFAQTIMTSRIVGTTAYMAPEAL*GEITPKSDIYSFGVVL |
|
Parental | LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDVKMNDADSTSVEIMYSVAS-QCLHEKKNKRPD |
| LEIITGLPA.DEH.EPQLLLDIKEEIEDEEKTIEDYIDVKMND.DSTSVEIMYSVAS..CLHEKKNKRPD |
Retrocopy | LEIITGLPAMDEHHEPQLLLDIKEEIEDEEKTIEDYIDVKMNDVDSTSVEIMYSVAS<SCLHEKKNKRPD |
|
Parental | IKKVQQQLLEMTV |
| IKKVQQ.LLEM.V |
Retrocopy | IKKVQQLLLEMRV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1982 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.