>retro_chof_2019
GCAGGGTGGGCTCCTGGGAGGCCGTGAACATGGGGGGGGCAGCCCCTGGTGGTGGCGAGGATCTCACAGTGAGCAGACGG
CCACCTGCTCCTCATCTGGAACATCAGCACTGGAATGGCTGTAGTTGGAAGAATGTTACTTCCAAGAAGTTTGATTGACA
TTGAAATCCACAAGTGTTTCAGGTATTCCAGTAGAATTTATAAAAAGGAATGTTAAGCTACGTGGACAATTACACCGAAT
AACAGAGAATGGTTTAGAAACTGAACATTCTATTATTTTACCTATTATATCTTCATGGAGAAATGAGCCACATGGTGTTT
TGCTGGTTAAGTTGGCTGGAGTAGAACTCATTGAAAGTGGGAAGGTACGGTTATAAAAGGAGTTTACAACCTTCCCAACT
ACTGTGGTTGCGACTTCTTGGAAAGGAGAACTCATCATTTTTTTGATACCTTTTAGTGAAG
ORF - retro_chof_2019 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.43 % |
Parental protein coverage: |
53.63 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | AASAPQLPDRDPAAPNVVARISQWADDHLRLVRNISTGMAIVGIMLLL-RSVRLTSKFTSSSGIPAEFIK |
| A..AP..P......P.VVARISQ.AD.HL.L..NISTGMA.VG.M.LL...V.LT.K.TS.SGIP.EFIK |
Retrocopy | AGWAPGRP*TXXXQPLVVARISQ*ADGHLLLIWNISTGMAVVGRM-LL>QEV*LTLKSTSVSGIPVEFIK |
|
Parental | RNVKLRGRLHRVTENGLEIEHIPITFPIISSWRNEPHGVLLVRLAGVELTETGKVWL-QNELKPSQLLWF |
| RNVKLRG.LHR.TENGLE.EH..I..PIISSWRNEPHGVLLV.LAGVEL.E.GKV.L....L.PSQLLW. |
Retrocopy | RNVKLRGQLHRITENGLETEH-SIILPIISSWRNEPHGVLLVKLAGVELIESGKVRL>KRSLQPSQLLWL |
|
Parental | QLLGKENSTLFCYLLVK |
| .LLGKENS..F.YLLVK |
Retrocopy | RLLGKENSSFF*YLLVK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2019 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.