>retro_chof_2031
GTTCCAGAATATCTTAACCATGTAAGTAAACGTTTAGAAGAAGGAGACCGAGTAATCACCTATTTAGCCCACAGTACACA
GAAACCACTGATTGCCTGTGTGGGAAAACAGCTATTAGGAGAACATTTAACAGCAATTCTGCAGAAAGGGCTTGATCACT
TACTCGATGAGAATAGAGTACCTGATCTCACACAGATGTACCAGTTGTTCAGTCGAGTAAAAGGCGGCCAGCAGATATTA
CTGCAGCACTGGAGTGAATACATAAAGACTTTTGGAACAACAATAGTTATCAATCCTGAAAAAGATAAAGATATGGTGCA
AGACCTGCTAGATTTTAAAGATAAAGTGTACCACATCATAGAAGTGTGCTTTCAGAAAAATGAAAAATTTATCAACTTGA
TGAAGGAATCCTTTGAAACATTTATCAACGAGAGAACAAATAAGCCTGCAGAACTGATTGCAAAGCATGTTGATTCAAAG
TTAAGAGCGGGTAATAAAGAAGCAACTGATGAAGAACTAGAAAGAATCCTTGACAAAATCATGATAATATTCAGGTTTAT
TCATGGTAAAGATGTTTTTGAAGCATTTTATAAAAAAGACTTGGCAAAAAGACTTCTTGTTGGAAAAAGTGCCTCAATAG
ATGCTGAAAAGTCTGTGTTGTCAAAACTAAAACATGAATGTGGTGCTGCATTCACCAGCAAACTGGAAGGTATGTTCAAG
GACATGGAACTTTCAAAAGACATCATGGTTCATTTTAAGCAGTATATGCAGAATCGAAGTGATCCAGGATCTATCGCTCT
AACAGTAAGTATACTTACAATGGGATACTGGCCAACATACACACCTATGGAAGTACATTTAACTCCAGAAATGATTAAAC
TTCAGGAAGTATTTAAAACATTTTATCTTGGAAAGCACAGTGGTCGAAAACTTCAGTGGCAAACAACTTTGGGACATGCT
GCTTTAAAAGCTGAGTTTAAAGAAGGAACGAAGGAGTTTCAGGTGTCTCTTTTCCAAACGTTAGTGCTTCTCATGTTTAA
CAAAGAAGATGAATTCAGTTTTGAAGAAATAAAAATGGCTACTGGTATAGAGAATAGTGAATTGCGAAGAACATTACAAT
CACTGGCTTGTGGTAAAGCACGTGTGCTGATTAAAAGTTCAAAAGTAAAGGATGTTGAAGATGGAGACAAATTCATTTTT
AATGGAGAGTTCAAGCACAAGTTGTTTAGAATAAAGATCAGTCAAATTCAGATGAAAGAAACTGTTGAGGAAAAAGTTAG
CACCAGGGAAAGAGTGTTTCAGGATAGACAATACCAGATTGATGCTCTATATTAAGAATAATGAAAATGAGAAATACTCT
TGGTCATAATCTTCTAGTCTCTGAATTATATAATCAGCTGAAATTTCCAGTAAAGCCTGGAGATCTAAAAAAGAGAATTG
AATCTCTTATAGAAAGAGCCTATATGGAGAGAGAGAAAGACAATCCGAATCAGTACCACTACGTGGCA
ORF - retro_chof_2031 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.46 % |
Parental protein coverage: |
79.25 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQL |
| VPEYLNHVSKRLEE.GDRVITYL.HSTQKPLIACV.KQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQL |
Retrocopy | VPEYLNHVSKRLEE-GDRVITYLAHSTQKPLIACVGKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQL |
|
Parental | FSRVKGGQQILLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDKVDHIIEVCFQKNEKFINLMKESFE |
| FSRVKGGQQILLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDKV.HIIEVCFQKNEKFINLMKESFE |
Retrocopy | FSRVKGGQQILLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDKVYHIIEVCFQKNEKFINLMKESFE |
|
Parental | TFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGK |
| TFIN.R.NKPAELIAKHVDSKLRAGNKEATDEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGK |
Retrocopy | TFINERTNKPAELIAKHVDSKLRAGNKEATDEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGK |
|
Parental | SASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPT |
| SAS.DAEKS.LSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQN.SDPGSI.LTV.ILTMGYWPT |
Retrocopy | SASIDAEKSVLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNRSDPGSIALTVSILTMGYWPT |
|
Parental | YTPMEVHLTPEMIKLQEVFKTFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEG |
| YTPMEVHLTPEMIKLQEVFKTFYLGKHSGRKLQWQTTLGHA.LKAEFKEG.KEFQVSLFQTLVLLMFN.. |
Retrocopy | YTPMEVHLTPEMIKLQEVFKTFYLGKHSGRKLQWQTTLGHAALKAEFKEGTKEFQVSLFQTLVLLMFNKE |
|
Parental | DEFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKDVEDGDKFIFNGEFKHKLFRIKINQIQMK |
| DEFSFEEIKMATGIE.SELRRTLQSLACGKARVLIKS.K.KDVEDGDKFIFNGEFKHKLFRIKI.QIQMK |
Retrocopy | DEFSFEEIKMATGIENSELRRTLQSLACGKARVLIKSSKVKDVEDGDKFIFNGEFKHKLFRIKISQIQMK |
|
Parental | ETVEEQVSTTERVFQDRQYQIDA-AIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDY |
| ETVEE.VST.ERVFQDRQYQIDA..I.RIMKMR.TLGHNLLVSELYNQLKFPVKPGDLKKRIESLI.R.Y |
Retrocopy | ETVEEKVSTRERVFQDRQYQIDA<SILRIMKMRNTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIERAY |
|
Parental | MERDKDNPNQYHYVA |
| MER.KDNPNQYHYVA |
Retrocopy | MEREKDNPNQYHYVA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2031 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.