RetrogeneDB ID: retro_chof_2086

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_48161:6224..6629(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FKBP7
• Ensembl ID: ENSCHOG00000013995
• Aliases: None
• Description: FK506 binding protein 7 [Source:HGNC Symbol;Acc:3723]

Sequence

>retro_chof_2086
AAAGAAAGAGGAGAGAGTACAGAAGTTAAAATAGAGGTTTTGCATCGCCCGGAAAATTGCTCCAAGCAAGAAGGGAGACC
TGTAAATGCCCATTAAAACGGCTACTTTTCTAAAGACGGCTTGAAATTCTACTGTAGCCAGGCACAAAATGAAGGCCACC
CCAAATGGTTTGTTCTTGGTGTTGGGCAAGTAATAAAAGGACTAGACATTGCTATGTTGAATATGTGCCCTGGAGAAAAG
TGGAAAGTGATTATGCCTCCTTCATTTGCATTTGGAAAAGGAAGGCTACGGGAGTAACTTAAAGAAGTCTTTCCTCTGTG
TGACATCCTTCCCTGATGTCACAGAGCACCTGGGCAGGTCTTGAAATGCATGTGACATTTTTGTGCTTTAATTAATGATT
CATGT

Alignment

ORF - retro_chof_2086 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.63 %
• Parental protein coverage: 56.84 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QKKEEGKEVKIEVLHRPENCSKTSKKGDLLNAHYDGYLAEDGSKFYCSRTQNEGHPKWFVLGVGQVIKGL
          ....E..EVKIEVLHRPENCSK....G...NAH..GY...DG.KFYCS..QNEGHPKWFVLGVGQVIKGL
Retrocopy KERGESTEVKIEVLHRPENCSK--QEGRPVNAH*NGYFSKDGLKFYCSQAQNEGHPKWFVLGVGQVIKGL

Parental  DIAMLNMCPGEKRKVIIPPSFAYG-KEGYGI-LEEVF-PLHDILPSRHGTPLHVLKCM---FLVINNSC
          DIAMLNMCPGEK.KVI.PPSFA.G.KEGYG..L...F.PL.DILP..H..P..VLKCM......IN.SC
Retrocopy DIAMLNMCPGEKWKVIMPPSFAFG>KEGYGSNLKKSF<PLCDILP*CHRAPGQVLKCM*HFCALINDSC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_2086 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013995	1 retrocopy	retro_chof_2086 ,