>retro_chof_2240
TCTCTGTTAAAAGGACTAAAACATGCTAACATAGTGCTGCTTCATGACATCATCCACACAAGGGAGATACTGACACTTGG
GTTTGAATATGTGCACACTGATTTATGTCAGTACATGGACAAGCACGCTGGGGGTGCTGCATCCAGACAATGTGAAGTTG
TTTTGATTTCAGTTGCTATGAGGGCTGCATTACATCTACAAGGGGTTTATTTTGCATAGAGACCTGAAGCCACAGAACCT
TCTGATCAGTGACATGGAGGAGTTAAAGCTGGCAGATTTTGGTCTTGCCAGAGCAAAATCCGTCCCTAGTCACACATACT
CCAAGGAAGTGGTTACCTTGTGGTATAGACCTCCAGATGTTTTCCTGGGCTCAATAGAATAGTCTACCTGCCTTAACATA
ACGGGAGTCGGTTGCATCTTTGTTGAAATGATTCAAGGGGTTGCTGCTTTTCTGGGAATGAAAGACATTCAGGATCAACT
TGAACAAGTGTTTCTGTTCCTTGGAACACCAAGTAACACATGACCTGGAGTTCATTCTTTACCACATTTTAAGCCAGAAT
GCTTTACGCTGTACAGCTCTAAAATCCTTAGACAAGCTTGGAATAAGCTTATCTATGTCAATCATGCAGAAGATCTGGCT
TCCAAGCTCGTACAATGTTCCCCAAAGAACAGACTATCAGCACAGGCACCAATGAGCCATGAGTATTTCAGTGACCTGCC
TCTGCAGCTATGGGAACTGACTGACTTATCTTCTATTTTTACCGTCCCAAATGTATGATTGCAACCAGAAGCTGGAGAAA
GCATGCAGGCCTTTGGGAAAAACAACAGTTATGGCAAAAGT
ORF - retro_chof_2240 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.79 % |
Parental protein coverage: |
59.83 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGG-LHPDNVKLFLFQLLRGLSYIHQRY |
| SLLKGLKHANIVLLHDIIHT.E.LTL.FEYVHTDLCQYMDKH.GG.LHPDNVKLF.FQLL.GL.YI.... |
Retrocopy | SLLKGLKHANIVLLHDIIHTREILTLGFEYVHTDLCQYMDKHAGG>LHPDNVKLF*FQLL*GLHYIYKGF |
|
Parental | ILHRDLKPQNLLISDTGELKLADFGLARAKSIPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCI |
| ILHRDLKPQNLLISD..ELKLADFGLARAKS.PSHTYS.EVVTLWYRPPDV.LGS.E.STCL...GVGCI |
Retrocopy | ILHRDLKPQNLLISDMEELKLADFGLARAKSVPSHTYSKEVVTLWYRPPDVFLGSIE*STCLNITGVGCI |
|
Parental | FVEMIQGVAAFPGMKDIQDXXXXXXXVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNKLSYVNH |
| FVEMIQGVAAF.GMKDIQD........LGTP...T.PGVHSLPHFKPE.FTLYSSK.LRQAWNKL.YVNH |
Retrocopy | FVEMIQGVAAFLGMKDIQDQLEQVFLFLGTPS-NT*PGVHSLPHFKPECFTLYSSKILRQAWNKLIYVNH |
|
Parental | AEELASKLLQCSPKNRLSAQAALSHQYFSDLPPRLWELTDXXXXXXXXNVRWQPEAGESMRA-GKNNSYG |
| AE.LASKL.QCSPKNRLSAQA..SH.YFSDLP..LWELTD........NV..QPEAGESM.A.GKNNSYG |
Retrocopy | AEDLASKLVQCSPKNRLSAQAPMSHEYFSDLPLQLWELTDLSSIFTVPNV*LQPEAGESMQAFGKNNSYG |
|
Parental | KS |
| KS |
Retrocopy | KS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2240 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.