RetrogeneDB ID: retro_chof_230

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: GeneScaffold_5068:27279..27585(+)
• Located in intron of: ENSCHOG00000012396

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLRG1
• Ensembl ID: ENSCHOG00000010061
• Aliases: None
• Description: killer cell lectin-like receptor subfamily G, member 1 [Source:HGNC Symbol;Acc:6380]

Sequence

>retro_chof_230
GTGAGTTTGCTGCTATACCAGTGGATTCTGAGTGAGAGCTCCAGCTACTCCTCTTGTGCCAGCTGACCCAGATGCCCAGA
CCTCTGGATGAGGTTTCGTGACCATTGTTACTACTTCTTGGTAGAGAAAAAGGACTGGAACTCTAGCCTGGAATTCTGCT
TAGCTAAAGACTCAAAGATCCTTATTTTTACGGACAACCGGGAAATGAGCCTGTGCAAAGAAGTCCTCAGTAATGACTTT
TACTGAGCTGGCCTGAAGAATAATTCTGGTTGGAGGTGGGAAGATGGATCTGCCCTAAACTTCACA

Alignment

ORF - retro_chof_230 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.39 %
• Parental protein coverage: 51.56 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VSLLLYQWIVSQGSSYSTCAS---CPDLWMRHGDHCYYFSVEKKDWNSSLEFCLAKDSQLLMFRDNREMN
          VSLLLYQWI.S..SSYS.CAS...CPDLWMR..DHCYYF.VEKKDWNSSLEFCLAKDS..L.F.DNREM.
Retrocopy VSLLLYQWILSESSSYSSCAS*PRCPDLWMRFRDHCYYFLVEKKDWNSSLEFCLAKDSKILIFTDNREMS

Parental  LCKDFLSNDFYWVGLRNNSGWRWEDGSALNFT
          LCK..LSNDFY..GL.NNSGWRWEDGSALNFT
Retrocopy LCKEVLSNDFY*AGLKNNSGWRWEDGSALNFT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_230 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010061	2 retrocopies	retro_chof_230 , retro_chof_732,