RetrogeneDB ID:

retro_chof_2499

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_80363:5300..6967(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARHGAP24
Ensembl ID:ENSCHOG00000009064
Aliases:None
Description:Rho GTPase activating protein 24 [Source:HGNC Symbol;Acc:25361]


Retrocopy-Parental alignment summary:






>retro_chof_2499
GGTAGCTTGTCTTCAGGAAGAAGCAACACAGATGTACACACAGTGGCATCACTTCTTAAACTGTATCTCCGAGAACTTCC
AGAGCCAGTTATTCCTTACGCGAAGTATGAAGATTTTTTGTCGTGTGCCAAACTACTCTGCAAGGAAGAGGAAGCAGGTG
TTAAGGAATTAGCAAAGCAGGTGAAGATTTTACCAGTGGTCAGTTACAACCTCCTCAAGTATATTTGCAGGTTCTTGGAT
GAAGTACAATCATATTCAGGCATTAACAAAATGAGTGCACAGAACTTGGCAACTGTATTTGGACCTAATATTCTGCGTCT
TAAAGTGGAAGATCCTTTGACCATCATGGAAGGTACAGTGATGGTCCAGCAGTTGATGTCAGTGATGATTAGCAAACATG
ATTGCCTCTTCCCCGAAGATGCAGAACTGCAAGGCAAGCCCCAAGATGGAATGAGCAACAACAACAATGAAATTCAGAAG
AAAGCCACCATGGGTCAGTTGCAGAACAAGGAGAACAATAATACCAAGGAAAGCCCTGGCAGACAGTGCTCTTGGGACAA
GTCTGAATCTCCCCAGAGAAGCAGCATGGACAACGGATCCCCCACAGCTCCATCGGGCAGCAAAACCAACAGCCCTCGGA
ACAGTGTTCACAAGCTGGATGTCTCCAGGAGCCCCCCTCTCATGGTCAAAAAGAACCCAGCCTTCAACAAGGGCAGTGGG
ATAGTCACCAATGGGTCCTTCAGCAGCAGTAATGCAGAGGGTCTTGAGAAAATGCAGACCACCCCCAATGGGAGCTTACA
GGCCAGAAGGACCTCTTCTCTGAAGGGGTCTGGTACCAAGATGGGCACTCACAGCGTGCAGAACGGAACAGTGCGCTTGG
GCGTTCTGAACACCGACGCGCCCGGGAACCCCGTGAACGGTCGCAGCATGAGCTGGCTGCCCAATGGCTACGTGACCCTG
AGGGATAACAAGCAGAAAGAGCAAGCGGGAGAGTCAGGCCAGCACAACAGGCTCTCCACCTACGACAACGTCCATCAACA
GTTCTCCGTGATGAACCTTGATGACAAGCAGAGTGTCGACAGCGCCACCTGGTCCACTTCCTCCTGTGAAATCTCCCTCC
CTGAGAACTCCAACTCCTGTCGCTCCTCCACCACCACCTGCCCAGAGCAAGACTTTTATGGTGAGAACTTGAGGACCCTG
TTCTGGATGGGCCCTCTCAGGACGACTTTTCCCACCCTTGGGGACTATGAAAGCAAAAGTGACAGGCGAAGCGCGAGAGG
GCGCAGTAGTCGCGCCACGAGCAGCAGCGACAACAGTGAGACGTTTGTGGGAACACCAGTAACCACAGTGCCCTGCACAG
TTTAGTGTCAAGCCTGAAACAGGAAATGACCAAACAGAAGATAGAGTATGAGTCCAGGATAAAGAGCTTAGAGAAGCGAA
ACTTGACTTTGGAAACAGAAATGATGAGCTTACACGATGAACTGGATCAAGAAAGGAAAAAGTTCACGATGATAGAAATC
AAAATGCGGACTGCTGAGCAAGCAAAAGAAGATGCAGAGAAAAGAAATGACATGCTATAGAAGGAAATGGAGCAGTTTTT
TTCCACATTTGGAGAGCTGACAGTGGAACCCAGGAGAACTGAAAGAGGAAACACAGTATGGATCCAG

ORF - retro_chof_2499 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.81 %
Parental protein coverage: 78.72 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYN
G...S..SNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLL.KEEEAGVKELAKQVK.LPVV.YN
RetrocopyGSLSSGRSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLCKEEEAGVKELAKQVKILPVVSYN
ParentalLLKYICRFLDEVQSYSGVNKMSAQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFPKD
LLKYICRFLDEVQSYSG.NKMSAQNLATVFGPNILR.KVEDPLTIMEGTV.VQQLMSVMISKHDCLFP.D
RetrocopyLLKYICRFLDEVQSYSGINKMSAQNLATVFGPNILRLKVEDPLTIMEGTVMVQQLMSVMISKHDCLFPED
ParentalAELQGKPQDGMS-NNNEIQKKATMGQLQNKENNNTKESPGRQCSWDKSESPQRSSMDNGSPTAPSGSKTN
AELQGKPQDGMS.NNNEIQKKATMGQLQNKENNNTKESPGRQCSWDKSESPQRSSMDNGSPTAPSGSKTN
RetrocopyAELQGKPQDGMSNNNNEIQKKATMGQLQNKENNNTKESPGRQCSWDKSESPQRSSMDNGSPTAPSGSKTN
ParentalSPRNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKMQTTPNGSLQARRTSSLKGSGTK
SPRNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKMQTTPNGSLQARRTSSLKGSGTK
RetrocopySPRNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKMQTTPNGSLQARRTSSLKGSGTK
ParentalMGTHSVQNGTVRLGVLNTDAPGNPVNGRSMSWLPNGYVTLRDNKQKEQAGESGQHNRLSTYDNVHQQFSV
MGTHSVQNGTVRLGVLNTDAPGNPVNGRSMSWLPNGYVTLRDNKQKEQAGESGQHNRLSTYDNVHQQFSV
RetrocopyMGTHSVQNGTVRLGVLNTDAPGNPVNGRSMSWLPNGYVTLRDNKQKEQAGESGQHNRLSTYDNVHQQFSV
ParentalMNLDDKQSVDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFYGGN-FEDPVLDGPPQDDLSHP-GDYES
MNLDDKQSVDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFYG.N..EDPVLDGP.QDD.SHP.GDYES
RetrocopyMNLDDKQSVDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFYGEN<LEDPVLDGPSQDDFSHP>GDYES
ParentalKSDRRSVGGRSSRATSSSDNSETFV-GNAGNHSALHSLVSSLKQEMTKQKIEYESRIKSLEQRNLTLETE
KSDRRS..GRSSRATSSSDNSETFV.GN..NHSALHSLVSSLKQEMTKQKIEYESRIKSLE.RNLTLETE
RetrocopyKSDRRSARGRSSRATSSSDNSETFV<GNTSNHSALHSLVSSLKQEMTKQKIEYESRIKSLEKRNLTLETE
ParentalMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFSTFGELTVEPRRTERGNTIWIQ
MMSLHDELDQERKKFTMIEIKMR.AE.AKEDAEKRNDML.KEMEQFFSTFGELTVEPRRTERGNT.WIQ
RetrocopyMMSLHDELDQERKKFTMIEIKMRTAEQAKEDAEKRNDML*KEMEQFFSTFGELTVEPRRTERGNTVWIQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST - click to see more details

Choloepus hoffmanni was not studied using EST data.

TSS - click to see more details

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab - click to see more details

retro_chof_2499 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000009064 1 retrocopy
retro_chof_2499 ,


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