RetrogeneDB ID: | retro_chof_2564 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_86533:3064..3630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000006810 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.04 % |
Parental protein coverage: | 71.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR |
H.LG.GFVNYVT..D.ERAI..LNGLRLQ.KT.KV.YA..S.EVIKD.NLYISGL....TQKD.EDMF.. | |
Retrocopy | HGLGHGFVNYVTVEDTERAISMLNGLRLQLKTMKVLYACLSLEVIKDTNLYISGL--LTTQKDTEDMFPW |
Parental | FGRIINSRVLVDQ-TTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLS |
FG.IINS.V..D..TTGLSRGV.FI.FDK.SEAEEAITSFNGH...G.SEPIT.KFA.NP.QNKNVAL.S | |
Retrocopy | FG*IINSSVPMDR<TTGLSRGVVFIQFDK*SEAEEAITSFNGHNSTGFSEPITMKFAVNPHQNKNVALFS |
Parental | QLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIY |
Q.YHSP.RRF.GPVH.QAQRFRFSP.G.DHMSGLSGVNVPGNASSGWCIF.. | |
Retrocopy | Q*YHSPFRRFSGPVHYQAQRFRFSPTGIDHMSGLSGVNVPGNASSGWCIFFW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018353 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002464 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005327 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006810 | 2 retrocopies |
retro_chof_2564 , retro_chof_44,
|
Choloepus hoffmanni | ENSCHOG00000008178 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015038 | 1 retrocopy |